SRR1547713_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547713_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	872755
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28974	3.319832026170002	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1086	0.12443354664252854	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	942	0.1079340708446242	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	35	1.2114833E-7	45.000004	6
TCTTGCG	25	3.8900307E-5	45.000004	1
CGAGTAG	25	3.8900307E-5	45.000004	1
CGTAGCT	25	3.8900307E-5	45.000004	24
GCGATAA	50	2.1827873E-11	45.000004	9
CGCCGGT	25	3.8900307E-5	45.000004	28
TAGGTCG	20	7.032353E-4	45.0	1
GTTACCG	20	7.032353E-4	45.0	1
GCGATAC	45	3.8380676E-10	45.0	9
ATGCGCG	20	7.032353E-4	45.0	1
CGGTAAT	20	7.032353E-4	45.0	32
TTACCGG	40	6.8121153E-9	45.0	2
ATCGACG	20	7.032353E-4	45.0	1
CGTTTTT	11145	0.0	44.293404	1
CGACGGT	245	0.0	44.081635	28
ACGTAGG	80	0.0	42.1875	2
CGGTCTA	260	0.0	41.53846	31
ACGGTCT	260	0.0	41.53846	30
GTCGCGT	60	3.6379788E-12	41.250004	29
CCGCTCG	60	3.6379788E-12	41.250004	19