##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547713_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 872755 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.7239087716484 31.0 31.0 33.0 30.0 34.0 2 32.10917038573254 33.0 31.0 34.0 30.0 34.0 3 32.01117266586843 33.0 31.0 34.0 30.0 34.0 4 35.79764767890187 37.0 35.0 37.0 35.0 37.0 5 35.78527307205344 37.0 35.0 37.0 35.0 37.0 6 35.856776529495676 37.0 35.0 37.0 35.0 37.0 7 36.19834776082635 37.0 35.0 37.0 35.0 37.0 8 36.11065648435128 37.0 35.0 37.0 35.0 37.0 9 37.93773968639538 39.0 39.0 39.0 35.0 39.0 10 37.574168008203905 39.0 37.0 39.0 35.0 39.0 11 37.28376004720683 39.0 37.0 39.0 34.0 39.0 12 36.786904686882345 39.0 35.0 39.0 33.0 39.0 13 36.613270620048006 39.0 35.0 39.0 33.0 39.0 14 37.64909281528035 40.0 35.0 41.0 33.0 41.0 15 37.85543823868096 40.0 35.0 41.0 33.0 41.0 16 37.948066754129165 40.0 35.0 41.0 33.0 41.0 17 37.86069286340382 40.0 35.0 41.0 33.0 41.0 18 37.628021609730105 39.0 36.0 41.0 33.0 41.0 19 37.42778328396858 38.0 36.0 41.0 33.0 41.0 20 37.16143935010398 38.0 35.0 41.0 33.0 41.0 21 37.047764836638 38.0 35.0 41.0 33.0 41.0 22 37.02012821467651 38.0 35.0 41.0 33.0 41.0 23 36.93425760952386 38.0 35.0 41.0 33.0 41.0 24 36.86308757898838 38.0 35.0 41.0 33.0 41.0 25 36.79405331393117 38.0 35.0 41.0 33.0 41.0 26 36.76403458015136 38.0 35.0 41.0 33.0 41.0 27 36.678409175541816 38.0 35.0 41.0 32.0 41.0 28 36.644165888479584 38.0 35.0 40.0 32.0 41.0 29 36.54454572016201 38.0 35.0 40.0 32.0 41.0 30 36.4186169085253 38.0 35.0 40.0 32.0 41.0 31 36.156319929418906 38.0 35.0 41.0 31.0 41.0 32 35.7465119076946 38.0 35.0 41.0 30.0 41.0 33 35.42385320049728 38.0 35.0 41.0 27.0 41.0 34 35.02783713642431 38.0 35.0 40.0 24.0 41.0 35 34.75343939593586 38.0 34.0 40.0 23.0 41.0 36 34.589333776374815 38.0 34.0 40.0 22.0 41.0 37 34.31920527524907 37.0 34.0 40.0 21.0 41.0 38 34.38961907981049 37.0 34.0 40.0 21.0 41.0 39 34.29980464162337 37.0 34.0 40.0 21.0 41.0 40 34.19004646206553 37.0 34.0 40.0 20.0 41.0 41 34.100534514268034 37.0 34.0 40.0 18.0 41.0 42 34.1036041042446 37.0 34.0 40.0 18.0 41.0 43 34.009199603554265 37.0 34.0 40.0 18.0 41.0 44 33.845385016413545 36.0 33.0 40.0 18.0 41.0 45 33.83607427055703 36.0 34.0 40.0 18.0 41.0 46 33.660036321762696 36.0 33.0 40.0 18.0 41.0 47 33.55709448814387 36.0 33.0 40.0 18.0 41.0 48 33.415180663531004 36.0 33.0 40.0 18.0 41.0 49 33.45907270654422 36.0 33.0 40.0 18.0 41.0 50 33.32733928765805 35.0 33.0 40.0 18.0 41.0 51 32.80944136670658 35.0 32.0 40.0 15.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 0.0 11 1.0 12 1.0 13 1.0 14 5.0 15 27.0 16 52.0 17 143.0 18 405.0 19 736.0 20 1334.0 21 2180.0 22 3353.0 23 5448.0 24 8715.0 25 14231.0 26 20455.0 27 21912.0 28 20521.0 29 18881.0 30 19474.0 31 21791.0 32 26711.0 33 35686.0 34 62547.0 35 112308.0 36 60629.0 37 71375.0 38 111235.0 39 232539.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.573998430258207 22.244730766366278 27.408722952031212 21.772547851344306 2 37.64871011910559 23.080016728635183 27.71762980446975 11.553643347789471 3 25.383526877531494 22.44845346059318 40.01661405549095 12.15140560638438 4 22.97460341103746 25.087682110099628 39.007969017651 12.929745461211908 5 20.976906462867586 29.52352034648899 37.52061002228575 11.978963168357671 6 19.8834724521773 37.02952145791201 33.83950822395747 9.247497865953216 7 80.56854443686944 2.9908737274492845 15.1876528922779 1.2529289434033606 8 81.84599343458359 2.4254229422919376 14.720511483749736 1.0080721393747387 9 78.33939650875675 4.3527679589346375 15.663960676249348 1.6438748560592606 10 39.20332739428591 29.613007086754013 23.314905099369238 7.868760419590835 11 31.71474239620512 21.106037776924797 32.80680145057892 14.37241837629117 12 31.241872003024906 20.766538146444304 33.59098486975153 14.400604980779255 13 22.325853189039307 29.457522443297375 33.583880928782996 14.632743438880327 14 14.744802378674427 33.925557573431256 35.67759565972123 15.652044388173083 15 14.23274573047419 26.924852908319057 45.51197071343046 13.330430647776295 16 17.862974145092263 24.024153399293045 44.30911309588602 13.803759359728677 17 18.34019856660804 23.438078269388317 35.126352756500964 23.095370407502678 18 19.628074316388908 25.957456559973874 37.8745466940894 16.53992242954781 19 22.208179844286196 27.49179322948594 33.808571706836396 16.49145521939147 20 24.07296434852851 26.825283155066426 33.954889974849756 15.146862521555304 21 20.80114121374269 26.19131371347056 37.04476055708647 15.962784515700282 22 20.252075324690207 22.448911779365343 36.78970616037719 20.509306735567257 23 16.67249113439625 27.723244209428767 36.003116567650714 19.60114808852427 24 16.678678437820466 27.659079581325802 40.05179002125453 15.6104519595992 25 17.036396239494476 28.307944383017 37.34816758425904 17.307491793229485 26 16.05525032798437 32.885632279391125 32.87944497596691 18.179672416657596 27 15.584556948971933 32.70115897359511 36.62241980853733 15.091864268895625 28 13.80570721451037 29.637870880143915 40.80457860453392 15.751843300811796 29 14.987711327921351 27.25197793195112 40.549065889052486 17.211244851075044 30 16.659429049389576 29.287600758517566 38.60739841077966 15.445571781313197 31 22.665123660133716 28.189354400719562 33.161654759926904 15.983867179219827 32 22.609094190236664 29.081357311043764 33.21172608578581 15.097822412933755 33 21.517493454635034 29.86061380341562 32.352836706750466 16.26905603519888 34 17.34220944022091 30.441876586212622 33.45818700551702 18.75772696804945 35 17.467445044714726 30.120595126925654 33.315420707987926 19.0965391203717 36 23.358101643645696 28.368442460942646 32.26793315420708 16.005522741204576 37 18.251743043580387 32.106834105791435 33.162685977164266 16.478736873463916 38 18.32209497510756 32.5496846193949 29.989286798700665 19.13893360679687 39 17.57618117341064 32.05149211405263 31.516404947551145 18.85592176498559 40 19.855056688303133 30.045430848290756 30.84027017891619 19.25924228448992 41 17.165642133244724 28.723983248448874 31.945047579217533 22.16532703908886 42 19.38470704836982 29.58745581520587 30.087939914408967 20.93989722201534 43 20.331822791046744 29.952735876620583 29.651735023001873 20.063706309330797 44 18.775028501698642 32.49124897594399 30.3129744315415 18.420748090815863 45 17.69179208368901 35.68126220989854 27.941633104364914 18.68531260204754 46 20.480088913841797 32.91038149308798 29.464855543651996 17.14467404941822 47 19.507880218388895 31.875612285234688 30.072700815234516 18.5438066811419 48 20.355999106278393 30.252132614536727 31.710273788176522 17.681594491008358 49 19.79879805902 28.442002623874966 31.407095920390027 20.352103396715 50 18.039083133296284 32.30528613413844 31.316692542580675 18.33893818998459 51 17.48635069406649 33.540798964199574 29.541051039524262 19.43179930220967 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1167.0 1 1352.0 2 1537.0 3 19772.5 4 38008.0 5 23998.0 6 9988.0 7 10186.0 8 10384.0 9 11317.5 10 12251.0 11 12847.5 12 13444.0 13 13303.5 14 13163.0 15 12695.0 16 12227.0 17 11457.0 18 10687.0 19 10056.0 20 9425.0 21 8737.0 22 8049.0 23 8296.0 24 8543.0 25 8722.0 26 9849.0 27 10797.0 28 12416.5 29 14036.0 30 16078.0 31 18120.0 32 20333.0 33 22546.0 34 25983.0 35 29420.0 36 29847.5 37 30275.0 38 35212.0 39 40149.0 40 47726.0 41 55303.0 42 62524.0 43 69745.0 44 72277.5 45 74810.0 46 71810.5 47 68811.0 48 65992.0 49 63173.0 50 57713.5 51 52254.0 52 48153.0 53 44052.0 54 39130.0 55 34208.0 56 30333.5 57 26459.0 58 23752.0 59 21045.0 60 18654.5 61 16264.0 62 13197.5 63 10131.0 64 8418.5 65 6706.0 66 4957.0 67 3208.0 68 2354.0 69 1500.0 70 1244.5 71 989.0 72 722.5 73 456.0 74 379.0 75 200.0 76 98.0 77 79.5 78 61.0 79 51.5 80 42.0 81 24.0 82 6.0 83 7.0 84 8.0 85 4.0 86 0.0 87 1.0 88 2.0 89 2.0 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 872755.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.337096759775566 #Duplication Level Percentage of deduplicated Percentage of total 1 75.32197557500521 21.344061100063744 2 7.586821624997213 4.299769969734074 3 3.440984356524136 2.9252251997909546 4 2.041775744195431 2.314319873001148 5 1.3386643849236517 1.8966931102223479 6 0.9478874126110166 1.611622639711901 7 0.7897397370920131 1.5665251941511262 8 0.644249059205938 1.4604918342490434 9 0.5514628212059542 1.4064169791538743 >10 6.626432605919259 43.28070886160748 >50 0.6599890259104352 11.883888408030305 >100 0.047171119345768425 2.1675161466628743 >500 0.0020332379028348458 0.378883205222091 >1k 4.0664758056696917E-4 0.12514208055693152 >5k 0.0 0.0 >10k+ 4.0664758056696917E-4 3.3387353978421124 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 28974 3.319832026170002 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 1086 0.12443354664252854 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 942 0.1079340708446242 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.020280605668257415 0.0 2 0.0 0.0 0.0 0.06210219362822327 0.0 3 0.0 0.0 0.0 0.09659068123356497 0.0 4 0.0 0.0 0.0 0.12867299528504564 0.0 5 0.0 0.0 0.0 0.23271135656627576 0.0 6 0.0 0.0 0.0 0.4007997662574262 0.0 7 0.0 0.0 0.0 0.5311914569380869 0.0 8 0.0 0.0 0.0 0.7142898064176086 0.0 9 0.0 0.0 0.0 0.8492646848199094 0.0 10 0.0 0.0 0.0 1.0125407474033377 0.0 11 0.0 0.0 0.0 1.2295546860229962 0.0 12 0.0 0.0 0.0 1.3623525502575178 0.0 13 0.0 0.0 0.0 1.420788193708429 0.0 14 0.0 0.0 0.0 1.4509226529782127 0.0 15 0.0 0.0 0.0 1.4872444156722104 0.0 16 0.0 0.0 0.0 1.5451071606579165 0.0 17 0.0 0.0 0.0 1.6175215266598302 0.0 18 0.0 0.0 0.0 1.7086123826274269 0.0 19 0.0 0.0 0.0 1.7657876494548872 0.0 20 0.0 0.0 0.0 1.8235358147475522 0.0 21 0.0 0.0 0.0 1.8887316600878827 0.0 22 0.0 0.0 0.0 1.9737497923243064 0.0 23 0.0 0.0 0.0 2.055215954076459 0.0 24 0.0 0.0 0.0 2.1223596541984864 0.0 25 0.0 0.0 0.0 2.1747225739182245 0.0 26 0.0 0.0 0.0 2.234991492457792 0.0 27 0.0 0.0 0.0 2.307176699073623 0.0 28 0.0 0.0 0.0 2.365039444059329 0.0 29 0.0 0.0 0.0 2.438599606991653 0.0 30 0.0 0.0 0.0 2.5235031595350357 0.0 31 0.0 0.0 0.0 2.603021466505491 0.0 32 0.0 0.0 0.0 2.676581629437815 0.0 33 0.0 0.0 0.0 2.748537676667564 0.0 34 0.0 0.0 0.0 2.8256498100841587 0.0 35 0.0 0.0 0.0 2.922469650703806 0.0 36 0.0 0.0 0.0 3.0032483342977123 0.0 37 0.0 0.0 0.0 3.0950266684235554 0.0 38 0.0 0.0 0.0 3.193106885666653 0.0 39 0.0 0.0 0.0 3.3578724842596146 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 35 1.2114833E-7 45.000004 6 TCTTGCG 25 3.8900307E-5 45.000004 1 CGAGTAG 25 3.8900307E-5 45.000004 1 CGTAGCT 25 3.8900307E-5 45.000004 24 GCGATAA 50 2.1827873E-11 45.000004 9 CGCCGGT 25 3.8900307E-5 45.000004 28 TAGGTCG 20 7.032353E-4 45.0 1 GTTACCG 20 7.032353E-4 45.0 1 GCGATAC 45 3.8380676E-10 45.0 9 ATGCGCG 20 7.032353E-4 45.0 1 CGGTAAT 20 7.032353E-4 45.0 32 TTACCGG 40 6.8121153E-9 45.0 2 ATCGACG 20 7.032353E-4 45.0 1 CGTTTTT 11145 0.0 44.293404 1 CGACGGT 245 0.0 44.081635 28 ACGTAGG 80 0.0 42.1875 2 CGGTCTA 260 0.0 41.53846 31 ACGGTCT 260 0.0 41.53846 30 GTCGCGT 60 3.6379788E-12 41.250004 29 CCGCTCG 60 3.6379788E-12 41.250004 19 >>END_MODULE