SRR1547712_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547712_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1348781
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5860	0.43446638112488234	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1427	0.10579923649576914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCATT	25	3.891166E-5	45.000004	27
CTCGGTA	30	2.1657834E-6	45.000004	28
ATATACG	35	1.2121382E-7	45.000004	1
CGACTTA	30	2.1657834E-6	45.000004	19
CGCGGAT	20	7.0337235E-4	45.0	45
CTATCGC	20	7.0337235E-4	45.0	44
CCGGCTA	20	7.0337235E-4	45.0	33
TTCGTAG	45	3.8562575E-10	45.0	1
TGTCGGT	20	7.0337235E-4	45.0	36
GCGTAAA	20	7.0337235E-4	45.0	21
CACGACG	375	0.0	44.999996	26
CGACGGT	380	0.0	44.407894	28
ACGACGG	395	0.0	42.72152	27
CGTAAGG	190	0.0	42.63158	2
CGGTCTA	405	0.0	42.22222	31
TTAAGCG	75	0.0	42.0	1
CGTTTTT	4045	0.0	41.82942	1
ACGGTCT	405	0.0	41.666664	30
TACGGGT	60	3.6379788E-12	41.250004	4
GCGCGAC	95	0.0	40.263157	9