SRR1547709_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547709_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1886443
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9511	0.5041763785070633	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3341	0.177105801765545	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGTA	30	2.1662454E-6	45.000004	44
CGCATCG	60	0.0	45.000004	21
CCGTATC	30	2.1662454E-6	45.000004	31
CCGCGAA	20	7.034438E-4	45.000004	19
CGCACCT	20	7.034438E-4	45.000004	36
CACGTCG	20	7.034438E-4	45.000004	31
ATACGAT	20	7.034438E-4	45.000004	35
AGTCGGT	20	7.034438E-4	45.000004	28
CCGGGTA	25	3.8917613E-5	45.0	5
GTCGAAC	45	3.8562575E-10	45.0	21
CACGACG	380	0.0	44.407894	26
CGACGGT	400	0.0	43.3125	28
CGGTCTA	395	0.0	43.291138	31
TACGTAG	125	0.0	43.2	1
TTCGTAG	115	0.0	43.04348	1
TATAGCG	110	0.0	42.954544	1
GTAAGCG	100	0.0	42.75	1
TACGGGA	655	0.0	42.595417	4
CGTTTTT	6065	0.0	42.551525	1
ACGGTCT	410	0.0	42.256096	30