SRR1547708_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547708_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2225608
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15840	0.7117156300660313	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5753	0.25849116286426005	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCG	4842	0.2175585278270028	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTC	3255	0.14625217019349318	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGC	2396	0.10765597535594768	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGTA	20	7.0347113E-4	45.000004	20
TCCGAAC	20	7.0347113E-4	45.000004	15
CGCGCCA	40	6.8193913E-9	45.000004	37
CATTCGG	20	7.0347113E-4	45.000004	28
ATCCGAT	20	7.0347113E-4	45.000004	18
TACGCTA	20	7.0347113E-4	45.000004	10
TCGGACG	20	7.0347113E-4	45.000004	1
CCGTAAG	20	7.0347113E-4	45.000004	1
TACGATA	20	7.0347113E-4	45.000004	16
GAACCGT	20	7.0347113E-4	45.000004	16
CGCACCG	40	6.8193913E-9	45.000004	38
GCTACGC	20	7.0347113E-4	45.000004	20
CGTTTCG	40	6.8193913E-9	45.000004	41
CTCTACG	20	7.0347113E-4	45.000004	27
AGTCCGC	25	3.8919876E-5	45.0	10
GCGAAGT	35	1.2126111E-7	45.0	21
TAGGTCG	55	1.8189894E-12	45.0	1
CACGCGT	25	3.8919876E-5	45.0	27
CCGGACG	25	3.8919876E-5	45.0	37
ATGTCGC	25	3.8919876E-5	45.0	10