##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547706_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1619402 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.615540180881585 31.0 31.0 33.0 30.0 34.0 2 31.996929730851264 33.0 31.0 34.0 30.0 34.0 3 32.058272745124434 33.0 31.0 34.0 30.0 34.0 4 35.767669794158586 37.0 35.0 37.0 35.0 37.0 5 35.6931404308504 37.0 35.0 37.0 33.0 37.0 6 35.74975268648551 37.0 35.0 37.0 33.0 37.0 7 36.095222804467326 37.0 35.0 37.0 35.0 37.0 8 35.989211449658576 37.0 35.0 37.0 35.0 37.0 9 37.777155394398676 39.0 38.0 39.0 35.0 39.0 10 37.40674705848208 39.0 37.0 39.0 35.0 39.0 11 37.097835497300856 39.0 37.0 39.0 33.0 39.0 12 36.42871380917153 38.0 35.0 39.0 33.0 39.0 13 36.1992253930772 38.0 35.0 39.0 32.0 39.0 14 37.13087979389923 39.0 35.0 41.0 32.0 41.0 15 37.355344133204724 39.0 35.0 41.0 32.0 41.0 16 37.463823683063254 39.0 35.0 41.0 33.0 41.0 17 37.37423320460269 39.0 35.0 41.0 33.0 41.0 18 37.295095967523814 39.0 35.0 41.0 32.0 41.0 19 37.25917591802406 39.0 35.0 41.0 32.0 41.0 20 37.15707897112638 39.0 35.0 41.0 32.0 41.0 21 37.024066291137096 39.0 35.0 41.0 32.0 41.0 22 36.99716685541947 39.0 35.0 41.0 32.0 41.0 23 36.90568308548464 38.0 35.0 41.0 32.0 41.0 24 36.89196876377824 38.0 35.0 41.0 32.0 41.0 25 36.81412089153898 38.0 35.0 41.0 32.0 41.0 26 36.775129337866694 38.0 35.0 41.0 32.0 41.0 27 36.67794778566409 38.0 35.0 41.0 31.0 41.0 28 36.68093036812354 38.0 35.0 41.0 31.0 41.0 29 36.60188514031723 38.0 35.0 41.0 31.0 41.0 30 36.59617747785911 38.0 35.0 41.0 31.0 41.0 31 36.450342780853674 38.0 35.0 41.0 31.0 41.0 32 36.279328418761985 38.0 35.0 41.0 30.0 41.0 33 36.19868815772736 38.0 35.0 41.0 30.0 41.0 34 36.020608224517446 38.0 35.0 41.0 30.0 41.0 35 35.922809160418474 38.0 35.0 41.0 30.0 41.0 36 35.83578197383972 38.0 35.0 41.0 29.0 41.0 37 35.58525245738859 38.0 35.0 40.0 28.0 41.0 38 35.69275139835569 38.0 35.0 40.0 29.0 41.0 39 35.61080756970783 38.0 35.0 40.0 29.0 41.0 40 35.49040571766615 38.0 35.0 40.0 28.0 41.0 41 35.436025767536414 38.0 35.0 40.0 28.0 41.0 42 35.44934858670052 38.0 35.0 40.0 28.0 41.0 43 35.36863731179781 38.0 34.0 40.0 28.0 41.0 44 35.21742285115123 37.0 34.0 40.0 27.0 41.0 45 35.206791148831485 37.0 34.0 40.0 27.0 41.0 46 35.06001412867219 37.0 34.0 40.0 27.0 41.0 47 34.94776899126962 37.0 34.0 40.0 26.0 41.0 48 34.82134207565509 37.0 34.0 40.0 26.0 41.0 49 34.899848833087766 37.0 34.0 40.0 27.0 41.0 50 34.76254012283547 36.0 34.0 40.0 26.0 41.0 51 34.181915299598245 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 0.0 11 3.0 12 6.0 13 7.0 14 16.0 15 61.0 16 128.0 17 319.0 18 649.0 19 1249.0 20 2275.0 21 3445.0 22 5399.0 23 7759.0 24 11264.0 25 16117.0 26 21531.0 27 25405.0 28 27746.0 29 30092.0 30 35414.0 31 42865.0 32 53926.0 33 72264.0 34 131312.0 35 213012.0 36 101993.0 37 136413.0 38 224078.0 39 454522.0 40 129.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.50415770759824 23.641936961915572 28.79661751683646 14.05728781364973 2 31.14143368972003 24.51176421913768 30.719734815691226 13.62706727545106 3 30.048190628392458 24.38338349588305 31.543927943771838 14.02449793195266 4 27.019912288610243 26.76988172177137 31.60487636794323 14.605329621675162 5 23.81187623579568 31.85614195857483 29.667309290713483 14.664672514915999 6 22.660278300261457 39.84767216540427 26.633535095053606 10.858514439280672 7 87.56485418691591 3.8992788696074228 6.803560820599208 1.7323061228774572 8 88.32118275758583 3.1955005613183136 6.642390215647505 1.840926465448357 9 84.19330098394346 5.201611459044758 7.824740243620794 2.780347313390992 10 45.83994585655692 32.05461028206709 13.071738827048504 9.033705034327486 11 38.79462912853016 20.66065127744686 25.0330060108608 15.511713583162178 12 35.660385747331425 20.640335136056397 28.068385737451234 15.630893379160948 13 25.94865265079332 30.67014861041298 26.69293973948408 16.68825899930962 14 17.441808766445885 34.66347454183705 30.339779745856806 17.554936945860263 15 17.12551917312687 27.008303064958543 40.7685676564559 15.097610105458681 16 22.373135268450948 23.816816330966617 37.98544153953126 15.824606861051176 17 21.92247508648254 23.30650449980919 28.362321400121775 26.408699013586496 18 23.347939548055393 25.630078263457744 32.67916181405235 18.342820374434513 19 27.098768557776264 26.672129588576528 27.670584573811812 18.558517279835396 20 28.787293087201327 26.6736116171278 27.03744962646705 17.501645669203818 21 25.447109488564294 26.65236920789279 30.111053339442584 17.78946796410033 22 23.895857853701553 22.617855232981064 30.866393891078314 22.619893022239072 23 20.780201580583448 26.77883564426869 30.78821688499829 21.652745890149575 24 21.013003565513692 25.724187076464027 35.5859138126296 17.676895545392682 25 20.50238297840808 26.582343358844806 32.64945949183711 20.26581417091 26 18.722281434751842 32.902392364588906 27.19942299688404 21.17590320377522 27 18.587478587774996 31.57295100290107 31.48884588261593 18.350724526708007 28 16.62842209655169 28.757961272123904 35.59733778271239 19.01627884861202 29 18.150280165147382 26.68157752059093 35.3876924938959 19.78044982036579 30 20.170593836490262 28.53454546801844 32.62951385758447 18.66534683790683 31 26.52664378579253 25.71492439801853 29.13600205507959 18.622429761109345 32 27.68960394021991 26.245614121756056 28.531087401398786 17.533694536625248 33 25.689853415026043 27.159408225999478 28.027691703480667 19.12304665549382 34 20.27180403630476 27.794951469740063 30.06220814843998 21.871036345515197 35 19.7454368958418 27.791369900741138 30.86361508754466 21.599578115872404 36 26.59191479323849 25.93377061409088 28.890108817946373 18.58420577472425 37 20.49812214632315 31.17595260472693 29.360591131788155 18.965334117161767 38 21.26741846681676 30.975261238407757 26.01095960113672 21.746360693638763 39 20.670654970168002 30.014597981230107 28.364667945327966 20.950079103273925 40 23.531711088414117 26.70356094410159 27.30674656447257 22.45798140301173 41 19.348129741719475 25.421544496054715 28.765247912501035 26.46507784972478 42 21.033998969990154 25.73468477870226 28.74067093902564 24.49064531228194 43 21.921116560310537 26.368066730805566 27.94852667836646 23.762290030517438 44 20.95261090204903 28.230544361437122 29.643596833893003 21.173247902620844 45 19.60328565729819 32.41974506638871 26.002931946483947 21.97403732982916 46 22.51466899509819 29.60463183323227 27.914687026445566 19.966012145223978 47 20.974532574370045 27.821627983663106 28.614266253839382 22.589573188127467 48 22.046471475272973 26.714305651098368 30.648906201177965 20.590316672450694 49 22.31231034665883 25.096300980238382 31.296305673328796 21.29508299977399 50 20.417722097416206 29.659466889629627 28.933334650692043 20.98947636226212 51 19.418526097905275 31.170147992901082 27.199855255211492 22.21147065398215 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1273.0 1 2087.0 2 2901.0 3 9358.5 4 15816.0 5 11097.5 6 6379.0 7 6517.5 8 6656.0 9 6951.5 10 7247.0 11 7129.5 12 7012.0 13 6954.0 14 6896.0 15 6491.0 16 6086.0 17 6185.0 18 6284.0 19 6103.5 20 5923.0 21 6033.0 22 6143.0 23 7366.0 24 8589.0 25 10583.0 26 15879.5 27 19182.0 28 22766.5 29 26351.0 30 30563.5 31 34776.0 32 38288.0 33 41800.0 34 45690.5 35 49581.0 36 53699.0 37 57817.0 38 64272.0 39 70727.0 40 87126.0 41 103525.0 42 119782.5 43 136040.0 44 141661.5 45 147283.0 46 141006.0 47 134729.0 48 130110.5 49 125492.0 50 118171.0 51 110850.0 52 104728.0 53 98606.0 54 92090.0 55 85574.0 56 78404.5 57 71235.0 58 66689.5 59 62144.0 60 55488.0 61 48832.0 62 42392.0 63 35952.0 64 30002.5 65 24053.0 66 19265.5 67 14478.0 68 11698.0 69 8918.0 70 6851.0 71 4784.0 72 3878.5 73 2973.0 74 2444.0 75 1512.5 76 1110.0 77 800.0 78 490.0 79 336.0 80 182.0 81 125.0 82 68.0 83 92.0 84 116.0 85 68.0 86 20.0 87 14.5 88 9.0 89 5.5 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 3.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1619402.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.56328035442291 #Duplication Level Percentage of deduplicated Percentage of total 1 81.83153942866241 16.008933476769354 2 5.715453382272076 2.2362603374004664 3 1.8285742405060559 1.0731873154768776 4 0.9459750878250066 0.7402550340568177 5 0.6151487676849794 0.6017163900949511 6 0.4541893200067122 0.5331259800765608 7 0.3610717860642598 0.4944624005193129 8 0.30309169505152 0.47435742427121136 9 0.27438933472048666 0.48311599332604216 >10 4.476171461671515 22.53701657737176 >50 2.3809653016464765 33.482739372786924 >100 0.8096231883008422 20.214749897421317 >500 0.003172504656349009 0.4301076642638237 >1k 3.172504656349009E-4 0.13499050068886242 >5k 3.172504656349009E-4 0.5549816354757737 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8942 0.5521791377310884 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2175 0.13430883745975367 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.021427662803923917 0.0 2 0.0 0.0 0.0 0.06891432763452188 0.0 3 0.0 0.0 0.0 0.09491157847155926 0.0 4 0.0 0.0 0.0 0.1322710482017436 0.0 5 0.0 0.0 0.0 0.23446926705042972 0.0 6 0.0 0.0 0.0 0.32499651105778554 0.0 7 0.0 0.0 0.0 0.39699839817414084 0.0 8 0.0 0.0 0.0 0.528590183289881 0.0 9 0.0 0.0 0.0 0.5808316897225025 0.0 10 0.0 0.0 0.0 0.6782133157795285 0.0 11 0.0 0.0 0.0 0.8303064958546427 0.0 12 0.0 0.0 0.0 0.9567111810409028 0.0 13 0.0 0.0 0.0 1.0020365542342173 0.0 14 0.0 0.0 0.0 1.0236494706070511 0.0 15 0.0 0.0 0.0 1.0589093998895889 0.0 16 0.0 0.0 0.0 1.1291822536961174 0.0 17 0.0 0.0 0.0 1.2220560429096667 0.0 18 0.0 0.0 0.0 1.327959333136553 0.0 19 0.0 0.0 0.0 1.3965031536332548 0.0 20 0.0 0.0 0.0 1.4720866097485368 0.0 21 0.0 0.0 0.0 1.5650221501517227 0.0 22 0.0 0.0 0.0 1.6697521677755123 0.0 23 0.0 0.0 0.0 1.7741734294511184 0.0 24 0.0 0.0 0.0 1.854696980737334 0.0 25 0.0 0.0 0.0 1.9300334320940693 0.0 26 0.0 0.0 0.0 2.005122878692258 0.0 27 0.0 0.0 0.0 2.0918215489421406 0.0 28 0.0 0.0 0.0 2.169010535987976 0.0 29 0.0 0.0 0.0 2.267874190596282 0.0 30 0.0 0.0 0.0 2.389215278232335 0.0 31 0.0 0.0 0.0 2.499626405302698 0.0 32 0.0 0.0 0.0 2.590894663585694 0.0 33 0.0 0.0 0.0 2.68660900752253 0.0 34 0.0 0.0 0.0 2.7965261250757996 0.0 35 0.0 0.0 0.0 2.9306497089666435 0.0 36 0.0 0.0 0.0 3.039023046778996 0.0 37 0.0 0.0 0.0 3.158017589208856 0.0 38 0.0 0.0 0.0 3.2962167516157197 0.0 39 0.0 0.0 0.0 3.5556952504690003 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 25 3.8915146E-5 45.0 20 ACTCGAT 20 7.034143E-4 45.0 33 TATCGGA 25 3.8915146E-5 45.0 44 CGGTCTA 260 0.0 43.26923 31 CGACGGT 245 0.0 43.163265 28 ACTACGG 75 0.0 42.0 2 TACGGGA 750 0.0 41.7 4 TACGTAG 55 6.184564E-11 40.909092 1 ACGTAGG 150 0.0 40.5 2 CGTTTTT 5530 0.0 40.28029 1 CTCACGA 275 0.0 40.090908 24 ACGGTCT 270 0.0 40.000004 30 ATTACGT 45 1.9292202E-8 40.0 21 TCGATTG 45 1.9292202E-8 40.0 1 GCTACGG 170 0.0 39.705883 2 CGTGCGG 120 0.0 39.375004 2 ACGGGAT 680 0.0 39.04412 5 GATCGAC 75 0.0 39.0 9 CCGGATA 35 6.249875E-6 38.571426 20 ATAGCCG 35 6.249875E-6 38.571426 1 >>END_MODULE