SRR1547704_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547704_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2185925
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10473	0.4791106739709734	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3855	0.17635554742271578	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACGC	20	7.034684E-4	45.000004	37
CCGTCGA	20	7.034684E-4	45.000004	17
GTCGTAA	30	2.1664036E-6	45.000004	31
ATGCGTA	40	6.8193913E-9	45.000004	42
CGTCCAC	55	1.8189894E-12	45.000004	35
GTCGAAC	25	3.891965E-5	45.0	9
CGCGACG	25	3.891965E-5	45.0	28
AATGCGC	25	3.891965E-5	45.0	23
CGTCCCG	35	1.2125929E-7	45.0	37
CAATCGT	25	3.891965E-5	45.0	18
TGCGTAG	110	0.0	42.954548	1
CGGTCTA	545	0.0	42.935776	31
CGTTTTT	7175	0.0	41.26829	1
ACGGGTA	55	6.184564E-11	40.909092	5
GCTACGG	55	6.184564E-11	40.909092	2
TTTCGCG	50	1.0822987E-9	40.5	1
AATATCG	50	1.0822987E-9	40.5	25
CGACGGT	595	0.0	40.084034	28
GTTAGCG	90	0.0	40.0	1
AGCGAAT	90	0.0	40.0	43