SRR1547701_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547701_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1132045
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6401	0.5654368863428574	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2886	0.25493686205053684	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGGCA	25	3.8907674E-5	45.000004	36
CTATGCG	35	1.2119017E-7	45.000004	1
CCCCGTT	35	1.2119017E-7	45.000004	30
CTAAACG	25	3.8907674E-5	45.000004	1
ACTACGT	25	3.8907674E-5	45.000004	18
ACTACGC	25	3.8907674E-5	45.000004	39
CTCGATA	25	3.8907674E-5	45.000004	24
CGTCGCA	25	3.8907674E-5	45.000004	31
AATCGTT	25	3.8907674E-5	45.000004	22
TGATCGC	20	7.0332416E-4	45.0	19
ACGCCCG	20	7.0332416E-4	45.0	26
GCGCGAA	20	7.0332416E-4	45.0	13
CGTACGA	20	7.0332416E-4	45.0	41
GCGGCAC	20	7.0332416E-4	45.0	5
CATCGTA	20	7.0332416E-4	45.0	28
CGATCTT	55	1.8189894E-12	45.0	10
TGTAACG	40	6.8157533E-9	45.0	1
CCGTTGT	20	7.0332416E-4	45.0	38
GCGTAGC	20	7.0332416E-4	45.0	16
TAGTCCG	20	7.0332416E-4	45.0	1