SRR1547699_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547699_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1301509
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7308	0.5615020718258575	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	2214	0.17011023358271055	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1621	0.1245477365120026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAC	25	3.8910905E-5	45.000004	8
CGCGATT	30	2.1657233E-6	45.000004	23
GTTCGCG	30	2.1657233E-6	45.000004	1
CGGACCG	25	3.8910905E-5	45.000004	6
GCGGTAT	20	7.033631E-4	45.0	36
GTTCGAC	20	7.033631E-4	45.0	38
TCGACTC	20	7.033631E-4	45.0	24
CGGTCTA	180	0.0	42.5	31
CGTTTTT	4535	0.0	42.32084	1
TACGTAG	80	0.0	42.1875	1
GTATGCG	65	0.0	41.53846	1
TAGTACG	65	0.0	41.53846	1
TTAGGCG	55	6.184564E-11	40.909092	1
TTTAGCG	160	0.0	40.78125	1
TACGCGG	50	1.0822987E-9	40.500004	2
ACGGTCT	190	0.0	40.26316	30
CACGACG	185	0.0	40.135136	26
GGCGTAG	90	0.0	40.0	1
TACGGGA	265	0.0	39.905663	4
TAAACGG	120	0.0	39.375004	2