SRR1547696_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547696_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1470598
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7113	0.48368078835956524	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2511	0.17074686624080818	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTC	20	7.033929E-4	45.000004	29
ACACGTA	20	7.033929E-4	45.000004	39
GCGAATA	20	7.033929E-4	45.000004	41
CACGCTT	20	7.033929E-4	45.000004	42
TATTACG	20	7.033929E-4	45.000004	1
ATACGTC	20	7.033929E-4	45.000004	26
TCGACCA	20	7.033929E-4	45.000004	20
TGCGTCG	40	6.8175723E-9	45.000004	1
TCGCAAG	50	2.1827873E-11	45.0	1
CGCGAGC	25	3.891339E-5	45.0	37
TACGCTA	25	3.891339E-5	45.0	35
CTTATCG	35	1.2122291E-7	45.0	1
CGCTAAG	25	3.891339E-5	45.0	37
GAACGTA	45	3.8562575E-10	45.0	9
CGTAAAG	25	3.891339E-5	45.0	35
TTACGCG	25	3.891339E-5	45.0	1
CGCGTCA	45	3.8562575E-10	45.0	39
TAGTCGA	25	3.891339E-5	45.0	27
CGAGATC	30	2.165918E-6	44.999996	20
CGTTTTT	4585	0.0	42.988007	1