SRR1547687_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547687_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1739447
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6767	0.3890316865072635	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3904	0.22443914646436483	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGA	20	7.034286E-4	45.000004	45
ACGTTAG	40	6.8193913E-9	45.000004	1
CGTAGGT	20	7.034286E-4	45.000004	14
CTACGGT	20	7.034286E-4	45.000004	35
GTCCGAT	20	7.034286E-4	45.000004	38
TACTCGT	20	7.034286E-4	45.000004	11
CTCGATA	20	7.034286E-4	45.000004	24
TGTACCG	20	7.034286E-4	45.000004	34
GTTGCGA	20	7.034286E-4	45.000004	23
TCGCACA	35	1.212411E-7	45.0	25
TCCGCAT	25	3.8916347E-5	45.0	30
CTCCGAT	25	3.8916347E-5	45.0	12
GCACGAC	25	3.8916347E-5	45.0	39
TTATCCG	35	1.212411E-7	45.0	1
CGTTACC	25	3.8916347E-5	45.0	38
TTGATCG	30	2.1661472E-6	44.999996	20
ATAGCGC	65	0.0	44.999996	12
TATTCCG	30	2.1661472E-6	44.999996	1
TCGGTTA	30	2.1661472E-6	44.999996	35
TATCCGA	30	2.1661472E-6	44.999996	42