SRR1547685_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547685_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	549597
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1746	0.31768732362076213	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1743	0.31714146911282265	No Hit
GAGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	551	0.10025527795821303	No Hit
GAGAGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTT	550	0.10007332645556653	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTG	35	1.2103737E-7	45.000004	1
ACACGTG	70	0.0	45.000004	42
ACGCCGA	25	3.8881386E-5	45.000004	12
ACCGCTC	25	3.8881386E-5	45.000004	18
TTGAGCG	25	3.8881386E-5	45.000004	1
GTTACAC	25	3.8881386E-5	45.000004	33
GGGCGTA	25	3.8881386E-5	45.000004	7
GTCAACG	25	3.8881386E-5	45.000004	1
CGAATAT	25	3.8881386E-5	45.000004	14
CGTACCA	25	3.8881386E-5	45.000004	13
TAAGGAG	35	1.2103737E-7	45.000004	1
ATAACGG	25	3.8881386E-5	45.000004	2
ATGCACC	25	3.8881386E-5	45.000004	27
GCGTACC	25	3.8881386E-5	45.000004	12
TGCGTTG	25	3.8881386E-5	45.000004	1
AGTCGTG	25	3.8881386E-5	45.000004	12
CCCGAGT	25	3.8881386E-5	45.000004	18
TTTAGCG	40	6.8030204E-9	45.0	1
TCGTTAG	20	7.03007E-4	45.0	1
CGAAAGA	20	7.03007E-4	45.0	42