##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547682_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2456330 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.512449467294704 31.0 31.0 33.0 30.0 34.0 2 31.941236723078738 31.0 31.0 34.0 30.0 34.0 3 32.05209682738069 33.0 31.0 34.0 30.0 34.0 4 35.77366029808698 37.0 35.0 37.0 35.0 37.0 5 35.683833605419466 37.0 35.0 37.0 33.0 37.0 6 35.72770108250927 37.0 35.0 37.0 33.0 37.0 7 36.06014053486299 37.0 35.0 37.0 35.0 37.0 8 36.07009237358172 37.0 35.0 37.0 35.0 37.0 9 37.82915569162124 39.0 38.0 39.0 35.0 39.0 10 37.25621394519466 39.0 37.0 39.0 34.0 39.0 11 37.04028815346472 39.0 37.0 39.0 33.0 39.0 12 36.67303293938518 39.0 35.0 39.0 33.0 39.0 13 36.57390782183176 39.0 35.0 39.0 32.0 39.0 14 37.69000052924485 40.0 36.0 41.0 33.0 41.0 15 37.78125699722757 40.0 36.0 41.0 33.0 41.0 16 37.80082195796167 40.0 36.0 41.0 33.0 41.0 17 37.707507134627676 40.0 36.0 41.0 33.0 41.0 18 37.54489991165682 39.0 36.0 41.0 33.0 41.0 19 37.44048234561317 39.0 36.0 41.0 32.0 41.0 20 37.29199211832287 39.0 35.0 41.0 32.0 41.0 21 37.209517450831115 39.0 35.0 41.0 32.0 41.0 22 37.109949396050204 39.0 35.0 41.0 32.0 41.0 23 36.99424629426828 39.0 35.0 41.0 32.0 41.0 24 36.863780518089996 38.0 35.0 41.0 31.0 41.0 25 36.74429575830609 38.0 35.0 41.0 31.0 41.0 26 36.59682127401449 38.0 35.0 40.0 31.0 41.0 27 36.578783795336946 38.0 35.0 41.0 31.0 41.0 28 36.559757443014576 38.0 35.0 41.0 31.0 41.0 29 36.51618023636889 38.0 35.0 41.0 31.0 41.0 30 36.4901417969084 38.0 35.0 41.0 31.0 41.0 31 36.34990697504 38.0 35.0 41.0 30.0 41.0 32 36.08469749585764 38.0 35.0 41.0 30.0 41.0 33 35.83156456990714 38.0 35.0 41.0 29.0 41.0 34 35.49700040304031 38.0 35.0 41.0 27.0 41.0 35 35.2736204011676 38.0 34.0 40.0 25.0 41.0 36 35.1101737144439 38.0 34.0 40.0 25.0 41.0 37 34.878793973122505 38.0 34.0 40.0 24.0 41.0 38 34.916700524766625 38.0 34.0 40.0 24.0 41.0 39 34.774119112659946 38.0 34.0 40.0 23.0 41.0 40 34.6268371920711 37.0 34.0 40.0 23.0 41.0 41 34.53585755985556 37.0 34.0 40.0 23.0 41.0 42 34.479208005439006 37.0 34.0 40.0 23.0 41.0 43 34.404604430186495 37.0 33.0 40.0 23.0 41.0 44 34.24222518961214 37.0 33.0 40.0 23.0 41.0 45 34.16781377095097 36.0 33.0 40.0 23.0 41.0 46 33.98477932525353 36.0 33.0 40.0 23.0 41.0 47 33.9906250381667 36.0 33.0 40.0 23.0 41.0 48 33.82347811572549 36.0 33.0 40.0 22.0 41.0 49 33.777102425162745 36.0 33.0 40.0 22.0 41.0 50 33.65848603404266 35.0 33.0 40.0 22.0 41.0 51 32.97698761974165 35.0 32.0 39.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 10.0 13 12.0 14 22.0 15 74.0 16 201.0 17 462.0 18 1051.0 19 2017.0 20 3734.0 21 5892.0 22 9223.0 23 13678.0 24 20167.0 25 30899.0 26 44022.0 27 51816.0 28 53186.0 29 54644.0 30 60119.0 31 70377.0 32 85745.0 33 110580.0 34 177203.0 35 245081.0 36 205900.0 37 260673.0 38 369808.0 39 579420.0 40 308.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.863918935973583 22.897534126114977 27.20912906653422 18.02941787137722 2 34.78620543656593 25.027785354573695 27.09131102091331 13.09469818794706 3 27.78283048287486 25.172717020921453 33.48906702275345 13.55538547345023 4 25.013943566214635 27.429132079158748 32.99080335296967 14.566121001656942 5 22.483583231894738 31.098020217153234 31.963131989594235 14.455264561357797 6 21.55606127841129 39.07182666824083 29.147386548224386 10.224725505123496 7 85.30376618776792 3.4685486070682683 9.655054491863877 1.572630713299923 8 85.80357688095654 2.954448302956036 9.481665737095586 1.7603090789918292 9 80.57492275060761 4.571494872431636 11.58630965709005 3.2672727198707014 10 41.35669881489865 24.625315002463026 20.14375104322302 13.874235139415307 11 33.22314184169065 24.71496093765903 25.28678964145697 16.77510757919335 12 28.62905228531997 22.245870872399067 30.222893503723036 18.90218333855793 13 23.915231259643452 25.52234431041432 31.334470531239695 19.227953898702534 14 21.564407062568954 26.98196089287677 31.903408743939128 19.550223300615148 15 21.38613297073276 22.424592786799817 36.80209906649351 19.387175175973912 16 23.798919526285147 21.20110082928597 34.92132571763566 20.078653926793226 17 24.07445253691483 21.642165344233064 30.632040483159834 23.651341635692273 18 25.856989899565612 21.82854095337353 31.760309078991828 20.55416006806903 19 27.460764636673414 23.82037429824169 28.032186229049028 20.686674836035877 20 28.82955466081512 23.377314937325195 27.666111638094232 20.127018763765456 21 27.062609665639386 24.54303778401111 29.006566707242104 19.387785843107398 22 26.300822772184517 22.310194477126444 28.973916371171626 22.41506637951741 23 24.890995916672434 24.62523358017856 28.550439069668975 21.93333143348003 24 24.059755814568888 23.18157576547125 32.37781568437465 20.380852735585204 25 23.906681919774623 24.215272377897108 30.14969486998897 21.728350832339302 26 22.280271787585544 25.549457931141173 29.28621154323727 22.884058738036014 27 22.293991442517903 24.44805868918264 30.12828080917466 23.12966905912479 28 21.608700785317932 25.192258369193066 32.099025782366375 21.100015063122626 29 23.049712375780125 23.377559204178592 31.541568111776513 22.03116030826477 30 23.594915992558 24.098797799969873 31.280609690066076 21.02567651740605 31 26.09515008162584 24.40840603664817 28.144182581330686 21.352261300395305 32 26.98012889147631 23.748641265627988 28.258540179861825 21.012689663033875 33 25.90116148888789 24.72579010149288 27.277727341196012 22.095321068423214 34 23.558072408837575 25.763557828141987 29.281000517031508 21.397369245988934 35 24.026820500502783 25.81558666791514 28.905847341358857 21.25174549022322 36 26.37646407445254 26.776288202318092 26.054316805966625 20.792930917262744 37 24.47956911327061 27.494514173584168 26.894757626214723 21.131159086930502 38 25.0925160707234 27.513078454442198 26.328221370907002 21.066184103927405 39 24.62869402726832 27.21462507073561 25.867574796546066 22.289106105450003 40 25.36145387631141 25.903156334857286 26.779097271132134 21.95629251769917 41 22.64777126851848 25.565660965749714 27.457059922730252 24.32950784300155 42 24.151030195454194 26.277006753978497 25.79555678593674 23.776406264630566 43 23.63314375511434 25.43603668888138 27.359760292794533 23.571059263209747 44 23.69803731583297 26.077969979603715 27.476519848717395 22.747472855845917 45 22.60758937113499 27.05520023775307 26.740258841442316 23.59695154966963 46 23.612055383437895 26.571429734604063 27.412196243990017 22.404318637968025 47 23.45743446523879 26.381552967231602 28.244779813787236 21.91623275374237 48 23.578020868531507 25.31435108474838 28.67175827352188 22.435869773198228 49 22.987912861871166 25.3169973089935 28.85630188126188 22.838787947873453 50 22.731595510375236 26.916538087309117 28.412265452931813 21.939600949383838 51 22.658641143494563 27.271457825292206 27.057317217149162 23.012583814064072 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1398.0 1 2232.5 2 3067.0 3 23857.0 4 44647.0 5 30886.5 6 17126.0 7 17230.5 8 17335.0 9 18022.5 10 18710.0 11 18759.0 12 18808.0 13 18687.5 14 18567.0 15 17508.0 16 16449.0 17 16043.5 18 15638.0 19 15089.5 20 14541.0 21 14151.0 22 13761.0 23 13711.5 24 13662.0 25 14535.5 26 17082.0 27 18755.0 28 20722.5 29 22690.0 30 26552.0 31 30414.0 32 35193.5 33 39973.0 34 47093.0 35 54213.0 36 59348.5 37 64484.0 38 72081.5 39 79679.0 40 89288.0 41 98897.0 42 109810.5 43 120724.0 44 127889.0 45 135054.0 46 140216.5 47 145379.0 48 149704.0 49 154029.0 50 162497.5 51 170966.0 52 168487.0 53 166008.0 54 161361.0 55 156714.0 56 149588.5 57 142463.0 58 135347.5 59 128232.0 60 124499.0 61 120766.0 62 112123.5 63 103481.0 64 93428.0 65 83375.0 66 72619.0 67 61863.0 68 53396.0 69 44929.0 70 37368.0 71 29807.0 72 25503.5 73 21200.0 74 18095.5 75 11908.5 76 8826.0 77 7104.5 78 5383.0 79 3766.0 80 2149.0 81 1585.0 82 1021.0 83 703.0 84 385.0 85 310.0 86 235.0 87 158.5 88 82.0 89 54.0 90 26.0 91 18.5 92 11.0 93 8.5 94 6.0 95 4.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2456330.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.490292689082448 #Duplication Level Percentage of deduplicated Percentage of total 1 75.07645074601808 18.386442528274653 2 5.659531267339524 2.7720715444031736 3 2.493412477579183 1.8319320411157327 4 1.6604278223776667 1.6265745343649944 5 1.237254159723819 1.5150358251210543 6 1.0053676773936486 1.4773049207708084 7 0.8638828218406167 1.4809720209163022 8 0.7502045284115441 1.4698182781979026 9 0.6723525974966962 1.4819500712663038 >10 9.893636706303093 55.05874558945938 >50 0.6454908740407858 9.852964985307313 >100 0.04030909832179829 1.6178457432354933 >500 0.00117545620745962 0.1888033439925652 >1k 3.358446307027486E-4 0.13883687417096496 >5k 0.0 0.0 >10k+ 1.679223153513743E-4 1.1007016994033998 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26765 1.089633721853334 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.071114223251762E-5 0.0 0.0 0.02084410482304902 0.0 2 4.071114223251762E-5 0.0 0.0 0.07474565713890234 0.0 3 4.071114223251762E-5 0.0 0.0 0.13507956992749345 0.0 4 4.071114223251762E-5 0.0 0.0 0.2026193548912402 0.0 5 4.071114223251762E-5 0.0 0.0 0.3127022834879678 0.0 6 4.071114223251762E-5 0.0 0.0 0.6191757622143604 0.0 7 4.071114223251762E-5 0.0 0.0 0.7615833377437071 0.0 8 4.071114223251762E-5 0.0 0.0 1.1082387138535945 0.0 9 4.071114223251762E-5 0.0 0.0 1.34021080229448 0.0 10 4.071114223251762E-5 0.0 0.0 1.6757927477171226 0.0 11 4.071114223251762E-5 0.0 0.0 1.9092304372783788 0.0 12 4.071114223251762E-5 0.0 0.0 2.1146588609836625 0.0 13 4.071114223251762E-5 0.0 0.0 2.245423049834509 0.0 14 4.071114223251762E-5 0.0 0.0 2.332382049643167 0.0 15 4.071114223251762E-5 0.0 0.0 2.3999625457491462 0.0 16 4.071114223251762E-5 0.0 0.0 2.4840717656015276 0.0 17 4.071114223251762E-5 0.0 0.0 2.5605680018564283 0.0 18 4.071114223251762E-5 0.0 0.0 2.672930754418177 0.0 19 4.071114223251762E-5 0.0 0.0 2.7395341831105755 0.0 20 8.142228446503523E-5 0.0 0.0 2.8139541511116177 0.0 21 8.142228446503523E-5 0.0 0.0 2.886745673423359 0.0 22 1.2213342669755285E-4 0.0 0.0 2.967720135323837 0.0 23 1.2213342669755285E-4 0.0 0.0 3.0545977128480293 0.0 24 1.2213342669755285E-4 0.0 0.0 3.134310129339299 0.0 25 1.2213342669755285E-4 0.0 0.0 3.206979518224343 0.0 26 1.2213342669755285E-4 0.0 0.0 3.2796489071093866 0.0 27 1.2213342669755285E-4 0.0 0.0 3.36200754784577 0.0 28 1.2213342669755285E-4 0.0 0.0 3.4381373838205778 0.0 29 1.2213342669755285E-4 0.0 0.0 3.522043047961797 0.0 30 1.2213342669755285E-4 0.0 0.0 3.632248109985222 0.0 31 1.2213342669755285E-4 0.0 0.0 3.7174972418201135 0.0 32 1.2213342669755285E-4 0.0 0.0 3.82399758990038 0.0 33 1.2213342669755285E-4 0.0 0.0 3.9107123228556424 0.0 34 1.2213342669755285E-4 0.0 0.0 3.9975899003798347 0.0 35 1.2213342669755285E-4 0.0 0.0 4.0883757475583495 0.0 36 1.2213342669755285E-4 0.0 0.0 4.17716674876747 0.0 37 1.2213342669755285E-4 0.0 0.0 4.270720953617795 0.0 38 1.2213342669755285E-4 0.0 0.0 4.383002283895079 0.0 39 1.2213342669755285E-4 0.0 0.0 4.54083938233055 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 17320 0.0 42.193993 1 CGTTAGG 315 0.0 39.285713 2 AGGGCGA 3075 0.0 38.121952 6 TTAATCG 285 0.0 37.894737 20 CGAATAT 185 0.0 37.7027 14 GGGCGAT 6485 0.0 37.575172 7 GTCGATA 30 1.14029994E-4 37.499996 8 GCGATAC 170 0.0 37.058826 9 GGCGATT 1755 0.0 36.923077 8 ATAGGGC 1200 0.0 36.5625 4 ACGTTAG 80 0.0 36.5625 1 GTAGGGC 1225 0.0 36.55102 4 TAGGGTA 1085 0.0 36.29032 5 GTTTTTT 20905 0.0 36.238937 2 TTACGGG 635 0.0 36.14173 3 GACCGAT 1885 0.0 36.04775 9 AATCGTT 300 0.0 36.0 22 TAAGGGA 2160 0.0 35.833336 4 TAACGGG 515 0.0 35.82524 3 TAGGGAC 1900 0.0 35.76316 5 >>END_MODULE