##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547674_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1293637 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.425985805910003 31.0 31.0 33.0 30.0 34.0 2 31.84323423031345 31.0 31.0 34.0 30.0 34.0 3 31.995687352789073 33.0 31.0 34.0 30.0 34.0 4 35.70322663931226 37.0 35.0 37.0 33.0 37.0 5 35.59837033108979 37.0 35.0 37.0 33.0 37.0 6 35.65758864349118 37.0 35.0 37.0 33.0 37.0 7 36.02527370506564 37.0 35.0 37.0 35.0 37.0 8 36.04239520050833 37.0 35.0 37.0 35.0 37.0 9 37.822889264917436 39.0 38.0 39.0 35.0 39.0 10 37.09638638969046 39.0 37.0 39.0 33.0 39.0 11 36.91807516327996 39.0 37.0 39.0 33.0 39.0 12 36.46155065138056 39.0 35.0 39.0 32.0 39.0 13 36.317030202444734 39.0 35.0 39.0 32.0 39.0 14 37.40319656905299 39.0 35.0 41.0 32.0 41.0 15 37.5313383893627 39.0 35.0 41.0 32.0 41.0 16 37.57291187558798 39.0 35.0 41.0 33.0 41.0 17 37.49713946029682 39.0 35.0 41.0 32.0 41.0 18 37.405486237638534 39.0 36.0 41.0 32.0 41.0 19 37.361385767413886 39.0 35.0 41.0 32.0 41.0 20 37.255653633901936 39.0 35.0 41.0 32.0 41.0 21 37.165950726517565 39.0 35.0 41.0 32.0 41.0 22 37.074271221370445 39.0 35.0 41.0 32.0 41.0 23 36.97147422344908 39.0 35.0 41.0 32.0 41.0 24 36.876491627867786 38.0 35.0 41.0 31.0 41.0 25 36.747613897870885 38.0 35.0 41.0 31.0 41.0 26 36.60764186553106 38.0 35.0 40.0 31.0 41.0 27 36.58154258111047 38.0 35.0 41.0 31.0 41.0 28 36.60916624988308 38.0 35.0 41.0 31.0 41.0 29 36.59570961560314 38.0 35.0 41.0 31.0 41.0 30 36.61395275490729 38.0 35.0 41.0 31.0 41.0 31 36.507551963958974 38.0 35.0 41.0 31.0 41.0 32 36.30141376599463 38.0 35.0 41.0 30.0 41.0 33 36.19818156097885 38.0 35.0 41.0 30.0 41.0 34 35.98513647955338 38.0 35.0 41.0 30.0 41.0 35 35.870691700994946 38.0 35.0 41.0 29.0 41.0 36 35.727490787601155 38.0 35.0 41.0 29.0 41.0 37 35.474889787475156 38.0 34.0 40.0 27.0 41.0 38 35.5527802621601 38.0 35.0 40.0 28.0 41.0 39 35.46165964640776 38.0 35.0 40.0 27.0 41.0 40 35.330733428311035 38.0 34.0 40.0 27.0 41.0 41 35.28080365666721 38.0 34.0 40.0 26.0 41.0 42 35.25053937078176 38.0 34.0 40.0 27.0 41.0 43 35.17456442572375 38.0 34.0 40.0 26.0 41.0 44 35.035094852729166 38.0 34.0 40.0 26.0 41.0 45 34.97012685938946 37.0 34.0 40.0 26.0 41.0 46 34.79165561900286 37.0 34.0 40.0 25.0 41.0 47 34.81534232555191 37.0 34.0 40.0 26.0 41.0 48 34.66073249296364 37.0 34.0 40.0 25.0 41.0 49 34.63320390495943 37.0 34.0 40.0 25.0 41.0 50 34.50143432817707 36.0 34.0 40.0 24.0 41.0 51 33.80016109619623 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 10.0 15 36.0 16 74.0 17 223.0 18 506.0 19 993.0 20 1685.0 21 2765.0 22 4279.0 23 6262.0 24 9560.0 25 13967.0 26 18856.0 27 21666.0 28 22860.0 29 25501.0 30 30085.0 31 36449.0 32 45420.0 33 59655.0 34 95828.0 35 141262.0 36 100586.0 37 128215.0 38 191484.0 39 335208.0 40 200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.84661771424287 24.385898053317895 28.63933236294262 14.128151869496621 2 31.297342299269427 25.19176554164731 29.567799931510923 13.94309222757234 3 28.14352094134599 25.430085874167176 32.1860769288448 14.240316255642039 4 24.08256721166757 28.203661459899493 32.37600656134603 15.337764767086902 5 21.974247799034817 32.46227496585209 31.231249570010753 14.332227665102343 6 19.873349324424087 41.590183335819866 28.14993696067753 10.38653037907852 7 89.0689582935553 3.4327249452512567 6.210242904307777 1.2880738568856642 8 90.44476928226388 2.3372089697496286 5.715745607152548 1.5022761408339433 9 85.310253185399 4.151087206070946 7.8637979587782345 2.674861649751824 10 41.07953003817918 22.016840891223737 20.889012914751202 16.014616155845882 11 36.52090965239863 26.45239738813902 19.97778356679656 17.048909392665795 12 29.98422277655942 24.04121094248232 26.288054531526235 19.68651174943203 13 23.02562465359293 31.10362489631945 28.162846300778348 17.70790414930927 14 21.18345409106264 32.27265453910177 28.786359697504015 17.757531672331574 15 20.880123249412318 24.882946297918195 36.40866796481548 17.828262487854012 16 21.831858550737184 22.729560147089174 36.01883681434591 19.419744487827728 17 22.420740903360063 23.49306644754286 28.455741448335196 25.630451200761883 18 25.332376856877158 23.865736678836488 30.077525611898853 20.724360852387495 19 27.307196686551173 26.608855498103413 25.807007684535925 20.276940130809493 20 28.487821544992915 25.703732963729394 25.50514557020246 20.303299921075233 21 25.60695156369213 26.80821590600764 27.50825772608545 20.076574804214783 22 24.79389504165388 24.155385166008703 27.442860709766343 23.607859082571075 23 23.379819841269228 28.50676039723663 26.087998410682438 22.0254213508117 24 23.31202648038051 26.011083480141643 31.132458332592527 19.544431706885316 25 21.964507817880904 26.188490279730715 30.23143277441817 21.61556912797021 26 21.48454319101881 29.073302634355695 27.547449555014275 21.89470461961122 27 21.808049707916517 28.04380208667501 28.22770220703335 21.920445998375122 28 20.23975813926163 28.21765302012852 31.532415971404653 20.010172869205196 29 20.962062773405524 26.102608382413305 31.139570064863637 21.795758779317538 30 22.2068478251627 26.845707103306417 30.400491018732456 20.546954052798426 31 25.42668461090708 26.371926591462675 27.35566468800753 20.845724109622715 32 25.68023332665964 25.999101757293587 27.074364756110096 21.246300159936673 33 24.614091897495204 26.99312094505646 26.576311592819312 21.816475564629027 34 21.098886318186633 27.886802866646516 28.35888274686021 22.655428068306644 35 21.774655486817398 27.479733495563284 28.533661297566475 22.211949720052843 36 25.68340268560655 27.24295919179801 25.450648056603203 21.622990065992237 37 22.470213823506903 29.303274411600782 27.207014023253816 21.019497741638496 38 22.565526496227303 29.490730398094673 25.33624192876363 22.60750117691439 39 22.997255025946227 28.7508783375862 25.140823894183605 23.111042742283963 40 24.024281927619572 26.7353979516665 25.236523074092652 24.00379704662127 41 20.957733892892673 26.125721512294408 26.648124628469965 26.268419966342954 42 23.421717220518584 27.25123044563506 25.03128775692099 24.295764576925365 43 22.677690882372723 26.883894013544758 26.769024077078807 23.669391027003712 44 23.072237420543786 28.313042994286654 26.573064932434676 22.041654652734884 45 21.59469773978326 29.976183427035558 24.71512487660758 23.7139939565736 46 22.801295881302096 28.904089787165955 26.20163152414472 22.092982807387234 47 22.734739343417047 27.182741371806774 27.37970543514139 22.70281384963479 48 23.654935658148307 26.132446737376867 27.72995824949348 22.482659354981344 49 22.870635270945407 25.729087835304647 27.953823213157943 23.446453680592004 50 21.924311070261595 28.527399881110387 26.807133685879425 22.741155362748593 51 21.284950878801396 29.22465884942994 25.828961292851087 23.661428978917577 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 539.0 1 711.0 2 883.0 3 5632.0 4 10381.0 5 7449.5 6 4518.0 7 4783.5 8 5049.0 9 5412.0 10 5775.0 11 5933.0 12 6091.0 13 6121.5 14 6152.0 15 6111.5 16 6071.0 17 5894.0 18 5717.0 19 5482.0 20 5247.0 21 5578.5 22 5910.0 23 5998.5 24 6087.0 25 6640.5 26 8095.0 27 8996.0 28 10729.5 29 12463.0 30 14484.5 31 16506.0 32 19565.5 33 22625.0 34 25991.0 35 29357.0 36 33977.0 37 38597.0 38 44545.0 39 50493.0 40 61288.5 41 72084.0 42 81703.5 43 91323.0 44 94331.0 45 97339.0 46 97407.5 47 97476.0 48 99214.0 49 100952.0 50 104522.5 51 108093.0 52 104084.5 53 100076.0 54 91691.0 55 83306.0 56 75262.5 57 67219.0 58 62453.0 59 57687.0 60 52721.0 61 47755.0 62 42832.5 63 37910.0 64 32304.5 65 26699.0 66 22265.5 67 17832.0 68 14416.5 69 11001.0 70 9515.0 71 8029.0 72 6827.0 73 5625.0 74 4813.0 75 3256.5 76 2512.0 77 1881.5 78 1251.0 79 886.5 80 522.0 81 347.5 82 173.0 83 127.5 84 82.0 85 52.0 86 22.0 87 14.0 88 6.0 89 5.5 90 5.0 91 5.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1293637.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.36938879129128 #Duplication Level Percentage of deduplicated Percentage of total 1 74.5449003586134 20.402483603229587 2 6.170863997938564 3.3778555187552524 3 2.9047419120994484 2.3850303219182587 4 1.9544336728951512 2.1396662024103517 5 1.4917537040664777 2.0414193553722146 6 1.1931967699983475 1.9594239781558636 7 1.032454646710269 1.9780356844632048 8 0.8793469487400044 1.9253750818000688 9 0.7444393511259013 1.8337365029251256 >10 8.478027507915671 50.45039113822103 >50 0.5813923331088742 9.962249835522243 >100 0.023880220120087937 0.9680868817505579 >500 0.0 0.0 >1k 2.842883339438619E-4 0.09811586203018424 >5k 2.842883339438619E-4 0.47813003344606037 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6145 0.4750173348474108 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03300771391047102 0.0 2 0.0 0.0 0.0 0.09562187847131769 0.0 3 0.0 0.0 0.0 0.15707652146622275 0.0 4 0.0 0.0 0.0 0.24056207421401832 0.0 5 0.0 0.0 0.0 0.3760714945537272 0.0 6 0.0 0.0 0.0 0.7320446152978 0.0 7 0.0 0.0 0.0 0.9037311084948869 0.0 8 0.0 0.0 0.0 1.3346093223987874 0.0 9 0.0 0.0 0.0 1.5885445453399987 0.0 10 0.0 0.0 0.0 1.9656209585842086 0.0 11 0.0 0.0 0.0 2.273899092249217 0.0 12 0.0 0.0 0.0 2.555740134210756 0.0 13 0.0 0.0 0.0 2.7459016710251793 0.0 14 0.0 0.0 0.0 2.850258611959924 0.0 15 0.0 0.0 0.0 2.940933198416557 0.0 16 0.0 0.0 0.0 3.0673983505419216 0.0 17 0.0 0.0 0.0 3.2023666608175247 0.0 18 0.0 0.0 0.0 3.3977073939598204 0.0 19 0.0 0.0 0.0 3.496653234253504 0.0 20 7.730143772944032E-5 0.0 0.0 3.6047206441992614 0.0 21 7.730143772944032E-5 0.0 0.0 3.733118332267862 0.0 22 1.5460287545888065E-4 0.0 0.0 3.873033934558149 0.0 23 1.5460287545888065E-4 0.0 0.0 4.032970609220361 0.0 24 1.5460287545888065E-4 0.0 0.0 4.171494785631518 0.0 25 1.5460287545888065E-4 0.0 0.0 4.293476454368575 0.0 26 1.5460287545888065E-4 0.0 0.0 4.410665433966407 0.0 27 1.5460287545888065E-4 0.0 0.0 4.536202968839017 0.0 28 1.5460287545888065E-4 0.0 0.0 4.674108733748339 0.0 29 1.5460287545888065E-4 0.0 0.0 4.808690536835295 0.0 30 1.5460287545888065E-4 7.730143772944032E-5 0.0 4.98470591054523 0.0 31 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.124312307084599 0.0 32 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.287882149320096 0.0 33 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.432745043625066 0.0 34 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.577376033616849 0.0 35 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.735534775211284 0.0 36 1.5460287545888065E-4 7.730143772944032E-5 0.0 5.880861478142632 0.0 37 1.5460287545888065E-4 7.730143772944032E-5 0.0 6.043812908876292 0.0 38 1.5460287545888065E-4 7.730143772944032E-5 0.0 6.216504320763862 0.0 39 1.5460287545888065E-4 7.730143772944032E-5 0.0 6.429778987459388 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGAAC 20 7.0336147E-4 45.000004 44 CGTTTTT 5255 0.0 42.602283 1 TTAACGG 130 0.0 39.80769 2 CGTAAGG 210 0.0 39.64286 2 TAATGCG 80 0.0 39.375004 1 AATGCGG 175 0.0 38.571426 2 CACGACC 740 0.0 37.7027 27 AGGGCGA 1760 0.0 37.585228 6 ATTCGGC 120 0.0 37.499996 17 AACACGT 635 0.0 37.204723 41 GCGCGAC 115 0.0 37.173916 9 TATTGCG 85 0.0 37.058823 1 GGGCGAT 3295 0.0 37.01062 7 AGTGTCG 55 2.750312E-9 36.81818 1 TAAGGGC 985 0.0 36.776646 4 GACACGA 760 0.0 36.71052 25 AGGGTAT 1085 0.0 36.70507 6 GCGAGAC 780 0.0 36.634617 21 AGGGTAC 805 0.0 36.61491 6 GGCGATA 765 0.0 36.47059 8 >>END_MODULE