##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547672_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3094714 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.44822267905855 31.0 31.0 33.0 30.0 34.0 2 31.875475084288887 31.0 31.0 34.0 30.0 34.0 3 32.02471795455089 33.0 31.0 34.0 30.0 34.0 4 35.72754154341887 37.0 35.0 37.0 33.0 37.0 5 35.619854371033966 37.0 35.0 37.0 33.0 37.0 6 35.66591323140038 37.0 35.0 37.0 33.0 37.0 7 36.01926575444451 37.0 35.0 37.0 35.0 37.0 8 36.024464619347704 37.0 35.0 37.0 35.0 37.0 9 37.775457764433156 39.0 38.0 39.0 35.0 39.0 10 37.14553590412555 39.0 37.0 39.0 33.0 39.0 11 36.92824312682852 39.0 37.0 39.0 33.0 39.0 12 36.461857218469945 39.0 35.0 39.0 32.0 39.0 13 36.284973991134564 39.0 35.0 39.0 32.0 39.0 14 37.370276865648975 39.0 35.0 41.0 32.0 41.0 15 37.51788598235572 39.0 35.0 41.0 32.0 41.0 16 37.56618479122788 39.0 35.0 41.0 33.0 41.0 17 37.49705239320984 39.0 35.0 41.0 32.0 41.0 18 37.37956690020467 39.0 35.0 41.0 32.0 41.0 19 37.32873990940681 39.0 35.0 41.0 32.0 41.0 20 37.22403201071246 39.0 35.0 41.0 32.0 41.0 21 37.12418627375583 39.0 35.0 41.0 32.0 41.0 22 37.0230619049127 39.0 35.0 41.0 32.0 41.0 23 36.912788710039116 39.0 35.0 41.0 31.0 41.0 24 36.787144143206774 38.0 35.0 41.0 31.0 41.0 25 36.63820566294656 38.0 35.0 41.0 31.0 41.0 26 36.47852531768687 38.0 35.0 40.0 31.0 41.0 27 36.430708621216695 38.0 35.0 40.0 30.0 41.0 28 36.434286334698456 38.0 35.0 40.0 30.0 41.0 29 36.42139499805152 38.0 35.0 41.0 30.0 41.0 30 36.437554488072244 38.0 35.0 41.0 31.0 41.0 31 36.317282307832 38.0 35.0 41.0 30.0 41.0 32 36.1346983921616 38.0 35.0 41.0 30.0 41.0 33 36.00136167671714 38.0 35.0 41.0 30.0 41.0 34 35.78872845762161 38.0 35.0 40.0 29.0 41.0 35 35.65303966699346 38.0 35.0 40.0 28.0 41.0 36 35.486474679081816 38.0 35.0 40.0 27.0 41.0 37 35.24231512184971 38.0 34.0 40.0 26.0 41.0 38 35.297210016822234 38.0 34.0 40.0 27.0 41.0 39 35.1654055915991 38.0 34.0 40.0 26.0 41.0 40 35.01485048376038 37.0 34.0 40.0 26.0 41.0 41 34.939583431619205 37.0 34.0 40.0 25.0 41.0 42 34.875158092153264 37.0 34.0 40.0 26.0 41.0 43 34.789909826885456 37.0 34.0 40.0 25.0 41.0 44 34.62236671950946 37.0 34.0 40.0 25.0 41.0 45 34.549945810824525 36.0 34.0 40.0 24.0 41.0 46 34.36782849723755 36.0 33.0 40.0 24.0 41.0 47 34.37577624297431 36.0 33.0 40.0 24.0 41.0 48 34.19852561496798 36.0 33.0 40.0 23.0 41.0 49 34.16435088993684 36.0 33.0 40.0 24.0 41.0 50 34.026785027630986 35.0 33.0 40.0 24.0 41.0 51 33.31430594232617 35.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 0.0 11 2.0 12 8.0 13 14.0 14 53.0 15 104.0 16 239.0 17 649.0 18 1452.0 19 2826.0 20 4828.0 21 7856.0 22 11517.0 23 16661.0 24 23876.0 25 33251.0 26 44092.0 27 52120.0 28 58413.0 29 65553.0 30 76662.0 31 91627.0 32 114156.0 33 147240.0 34 239285.0 35 342574.0 36 255394.0 37 326894.0 38 458498.0 39 718494.0 40 374.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.404868430491476 23.83881030686519 28.89498027927621 14.861340983367121 2 31.715693275695266 26.227496304989735 28.753804067193283 13.303006352121717 3 28.401332077859216 25.65687814770606 31.91092941060143 14.030860363833298 4 25.5191917572997 28.450221894494938 30.88569735361652 15.144888994588838 5 22.879594043262156 32.169467033141025 29.97721275697851 14.973726166618304 6 21.917534221255988 40.661915769922516 26.592925872956275 10.82762413586522 7 88.1125040956935 3.8790660461677553 6.429964125925691 1.5784657322130575 8 88.38558264188549 3.399861828912139 6.305396879970168 1.909158649232207 9 82.86277827288725 4.984854820186938 8.839201296145621 3.313165610780188 10 44.25904946305216 22.41728961060699 19.433233571826023 13.890427354514829 11 37.01314564124504 23.727006760560105 22.0464960574709 17.213351540723956 12 31.53700148058916 21.92619414912008 27.625945402386133 18.910858967904627 13 23.94841655804058 27.77587848182417 28.97999621289722 19.295708747238034 14 21.618799023108437 29.591975219681043 29.24228216242276 19.54694359478776 15 20.84121505250566 22.16973846371587 37.35181990969117 19.6372265740873 16 23.318471432255127 20.284265363455233 35.19426997131237 21.202993232977263 17 24.13638223112055 21.059522786273625 27.488259011979782 27.31583597062604 18 25.86070958414897 22.562149523348523 30.150637506406085 21.42650338609642 19 28.73990940681433 23.32377079109734 26.249824701087082 21.686495101001256 20 29.98852236426371 23.306741753842196 25.02812860897647 21.67660727291763 21 26.95719216703062 25.04208789568277 27.060788169763022 20.93993176752359 22 26.73743034089742 22.297860157675313 26.539512213406475 24.4251972880208 23 25.187691011188758 25.099799206000945 25.39976230436803 24.312747478442272 24 24.950609329327364 23.725391102376502 30.5128680711691 20.811131497127036 25 23.841039915158557 24.480517424227248 28.690793398032906 22.987649262581293 26 23.08956498080275 26.779663645816704 26.411649024756407 23.71912234862414 27 22.977502929188287 25.620364272756706 28.283324404129107 23.118808393925903 28 21.865025330289004 25.12170753097055 31.28990271798945 21.723364420750997 29 22.75932444807501 23.756379426337944 30.556200023653236 22.928096101933814 30 24.169083152756603 25.09191479406498 29.18411846781318 21.55488358536524 31 27.560769751259727 24.59749107671985 25.871308301833384 21.970430870187034 32 28.47646018339659 24.29145310358243 25.580069757657736 21.652016955363244 33 27.134203677625784 25.323535551265802 25.31600658413023 22.226254186978185 34 24.254551470669018 25.403284439208274 27.44017702443586 22.901987065686846 35 24.473214649237377 25.739309028233304 27.768640333161642 22.018835989367677 36 28.364333505454788 25.217709940240034 25.176284464412547 21.241672089892635 37 25.081057571071184 27.032352585731672 26.546168725122904 21.34042111807424 38 25.49133781021445 27.15717833699657 24.843168060117996 22.508315792670984 39 24.37246220490811 27.297514406824025 25.629541211239555 22.700482177028313 40 25.931540038917973 24.530505888427818 26.053134473815675 23.484819598838534 41 23.070823345872995 23.781066683383344 26.49802211125164 26.65008785949202 42 24.52178133423638 25.390132981593776 25.5318908306228 24.556194853547048 43 24.515318701501982 24.974197938807915 26.671931558134286 23.838551801555813 44 24.02402936103304 26.14464535333475 26.878186481852605 22.95313880377961 45 22.300283644950714 27.714418844520043 25.895737053569405 24.089560456959834 46 24.371395870506934 26.60749910977234 26.58950067760704 22.43160434211368 47 23.95523463557537 25.459250838688163 27.33932764061558 23.24618688512089 48 24.656591853075923 24.528987169735235 28.128673602794958 22.685747374393888 49 23.769563197116113 24.016371141242775 28.42508225315813 23.78898340848298 50 23.402453344638634 26.95215131349779 26.85227132458767 22.793124017275908 51 22.75118153082967 28.07771574368423 25.740763120598544 23.43033960488756 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1932.0 1 2664.0 2 3396.0 3 17073.0 4 30750.0 5 21310.5 6 11871.0 7 12516.5 8 13162.0 9 13948.5 10 14735.0 11 15146.5 12 15558.0 13 15656.5 14 15755.0 15 15440.0 16 15125.0 17 14833.0 18 14541.0 19 13782.0 20 13023.0 21 13343.0 22 13663.0 23 14389.0 24 15115.0 25 16147.0 26 17976.5 27 18774.0 28 22070.0 29 25366.0 30 28395.0 31 31424.0 32 39822.5 33 48221.0 34 56470.0 35 64719.0 36 71621.5 37 78524.0 38 87004.0 39 95484.0 40 114313.0 41 133142.0 42 152873.0 43 172604.0 44 184452.0 45 196300.0 46 196104.0 47 195908.0 48 201823.0 49 207738.0 50 213140.5 51 218543.0 52 216698.5 53 214854.0 54 203945.5 55 193037.0 56 187630.5 57 182224.0 58 176800.5 59 171377.0 60 161941.0 61 152505.0 62 143181.0 63 133857.0 64 120249.0 65 106641.0 66 93440.5 67 80240.0 68 70340.5 69 60441.0 70 53165.0 71 45889.0 72 37042.5 73 28196.0 74 23460.5 75 15504.5 76 12284.0 77 9115.5 78 5947.0 79 4679.5 80 3412.0 81 2391.5 82 1371.0 83 994.5 84 618.0 85 426.5 86 235.0 87 199.0 88 163.0 89 130.5 90 98.0 91 62.5 92 27.0 93 22.5 94 18.0 95 10.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3094714.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.785395916254224 #Duplication Level Percentage of deduplicated Percentage of total 1 79.62771385582408 15.754658445436814 2 5.942131542503627 2.351348503097933 3 2.0947204898469907 1.2433462267653808 4 1.1374301848834458 0.9001802614006885 5 0.7901993355355617 0.781720335316605 6 0.6118240138867476 0.7263108207492673 7 0.4862395941505472 0.6734310016299143 8 0.42053707526687695 0.6656394025295008 9 0.3629859249192438 0.6463638212899471 >10 5.62015387082023 27.825091606457587 >50 2.3216664429643266 32.522936573382836 >100 0.5814162898121211 14.763069921099921 >500 0.002153218590005765 0.2599066930011494 >1k 6.625287969248508E-4 0.2603327158241244 >5k 0.0 0.0 >10k+ 1.656321992312127E-4 0.6256636720184017 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19092 0.61692292082564 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3351 0.10828141146483972 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.231316367199037E-5 0.0 0.0 0.016964410927794944 0.0 2 3.231316367199037E-5 0.0 0.0 0.06320454814241316 0.0 3 3.231316367199037E-5 0.0 0.0 0.10307899211364928 0.0 4 3.231316367199037E-5 0.0 0.0 0.1700964935693573 0.0 5 3.231316367199037E-5 0.0 0.0 0.27062274575291934 0.0 6 3.231316367199037E-5 0.0 0.0 0.5452523238011655 0.0 7 3.231316367199037E-5 0.0 0.0 0.6840373617723641 0.0 8 3.231316367199037E-5 0.0 0.0 1.0644925508463787 0.0 9 3.231316367199037E-5 0.0 0.0 1.3004755851429244 0.0 10 3.231316367199037E-5 0.0 0.0 1.6484560447265886 0.0 11 3.231316367199037E-5 0.0 0.0 1.8793659123266317 0.0 12 3.231316367199037E-5 0.0 0.0 2.0715646098476306 0.0 13 3.231316367199037E-5 0.0 0.0 2.1861470882285086 0.0 14 6.462632734398074E-5 0.0 0.0 2.2467342701134903 0.0 15 6.462632734398074E-5 0.0 0.0 2.2998571111902426 0.0 16 6.462632734398074E-5 0.0 0.0 2.3743712666178522 0.0 17 6.462632734398074E-5 0.0 0.0 2.4512442829935175 0.0 18 6.462632734398074E-5 0.0 0.0 2.5638879715540757 0.0 19 6.462632734398074E-5 0.0 0.0 2.626769388059769 0.0 20 1.2925265468796148E-4 0.0 0.0 2.6916542207131258 0.0 21 1.2925265468796148E-4 0.0 0.0 2.768365671270431 0.0 22 1.938789820319422E-4 0.0 0.0 2.8497625305601746 0.0 23 1.938789820319422E-4 0.0 0.0 2.941887360189019 0.0 24 1.938789820319422E-4 0.0 0.0 3.0175647895088207 0.0 25 1.938789820319422E-4 0.0 0.0 3.08526086740164 0.0 26 1.938789820319422E-4 0.0 0.0 3.152827692639772 0.0 27 1.938789820319422E-4 0.0 0.0 3.230863982907629 0.0 28 1.938789820319422E-4 0.0 0.0 3.3028253984051514 0.0 29 1.938789820319422E-4 0.0 0.0 3.3820895888925437 0.0 30 1.938789820319422E-4 0.0 0.0 3.5046211055367316 0.0 31 1.938789820319422E-4 0.0 0.0 3.5878275019921064 0.0 32 1.938789820319422E-4 0.0 0.0 3.676817954744768 0.0 33 1.938789820319422E-4 0.0 0.0 3.7632879807310142 0.0 34 1.938789820319422E-4 0.0 0.0 3.8499518856992925 0.0 35 1.938789820319422E-4 0.0 0.0 3.9504135115555106 0.0 36 1.938789820319422E-4 0.0 0.0 4.040793430346067 0.0 37 1.938789820319422E-4 0.0 0.0 4.139639398018686 0.0 38 1.938789820319422E-4 0.0 0.0 4.250635115231973 0.0 39 1.938789820319422E-4 0.0 0.0 4.417758797743507 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 11430 0.0 40.610237 1 TACGGGA 640 0.0 38.671875 4 TATCACG 105 0.0 38.57143 1 CATACGA 435 0.0 38.275864 18 GCGTAAG 200 0.0 38.25 1 ATAGGGT 1600 0.0 37.6875 4 AGGGTAC 1555 0.0 37.62058 6 ATAGGGC 1425 0.0 37.42105 4 GGGCGAT 8455 0.0 37.123005 7 GTAGCAT 1595 0.0 36.677116 29 TAGGGTA 1490 0.0 36.543625 5 CATGCAC 3150 0.0 36.5 45 TCGATAG 235 0.0 36.38298 1 GGCGATA 1675 0.0 36.134327 8 GGTACCT 1735 0.0 36.051876 8 TAGGGAC 2315 0.0 35.961124 5 TGATTCG 470 0.0 35.904255 15 AACACGT 715 0.0 35.874126 41 AGGGCGA 4375 0.0 35.74286 6 GTAGGGA 2730 0.0 35.686813 4 >>END_MODULE