##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547670_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2488427 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.370522422397762 31.0 31.0 33.0 30.0 34.0 2 31.785558507442655 31.0 31.0 34.0 30.0 34.0 3 31.919946616878857 31.0 31.0 34.0 30.0 34.0 4 35.62872650071712 37.0 35.0 37.0 33.0 37.0 5 35.50117885716559 37.0 35.0 37.0 33.0 37.0 6 35.55058717816516 37.0 35.0 37.0 33.0 37.0 7 35.96267079564721 37.0 35.0 37.0 35.0 37.0 8 35.97438261198741 37.0 35.0 37.0 35.0 37.0 9 37.704561154496396 39.0 37.0 39.0 35.0 39.0 10 37.04947583352857 39.0 37.0 39.0 33.0 39.0 11 36.81916568177407 39.0 37.0 39.0 32.0 39.0 12 36.32450379295836 38.0 35.0 39.0 32.0 39.0 13 36.13102936111849 38.0 35.0 39.0 32.0 39.0 14 37.21812494399072 39.0 35.0 41.0 32.0 41.0 15 37.361230608733955 39.0 35.0 41.0 32.0 41.0 16 37.43952344191732 39.0 35.0 41.0 32.0 41.0 17 37.34287081758878 39.0 35.0 41.0 32.0 41.0 18 37.2423547084162 39.0 35.0 41.0 32.0 41.0 19 37.18938148476929 39.0 35.0 41.0 32.0 41.0 20 37.074863357454326 39.0 35.0 41.0 32.0 41.0 21 36.9739735182105 39.0 35.0 41.0 32.0 41.0 22 36.861426917486426 38.0 35.0 41.0 31.0 41.0 23 36.752646953276106 38.0 35.0 41.0 31.0 41.0 24 36.631871057499374 38.0 35.0 40.0 31.0 41.0 25 36.48971900722826 38.0 35.0 40.0 31.0 41.0 26 36.31128700982589 38.0 35.0 40.0 30.0 41.0 27 36.295037387072234 38.0 35.0 40.0 30.0 41.0 28 36.295700456553476 38.0 35.0 40.0 30.0 41.0 29 36.28726098856828 38.0 35.0 40.0 30.0 41.0 30 36.31068622868985 38.0 35.0 40.0 30.0 41.0 31 36.204554925661874 38.0 35.0 40.0 30.0 41.0 32 35.97935282007469 38.0 35.0 40.0 30.0 41.0 33 35.862600349538084 38.0 35.0 40.0 29.0 41.0 34 35.671275066538016 38.0 35.0 40.0 29.0 41.0 35 35.54797187138703 38.0 35.0 40.0 28.0 41.0 36 35.3906041848927 38.0 34.0 40.0 27.0 41.0 37 35.10945227647827 38.0 34.0 40.0 26.0 41.0 38 35.1871833089739 38.0 34.0 40.0 26.0 41.0 39 35.05465822384985 37.0 34.0 40.0 26.0 41.0 40 34.9195925779619 37.0 34.0 40.0 25.0 41.0 41 34.86008952643578 37.0 34.0 40.0 25.0 41.0 42 34.8183736151392 37.0 34.0 40.0 25.0 41.0 43 34.73638125611079 37.0 34.0 40.0 25.0 41.0 44 34.570263865486105 37.0 34.0 40.0 24.0 41.0 45 34.50191828010225 36.0 34.0 40.0 24.0 41.0 46 34.313754432016694 36.0 33.0 40.0 23.0 41.0 47 34.33095606180129 36.0 33.0 40.0 23.0 41.0 48 34.15601462289229 36.0 33.0 40.0 23.0 41.0 49 34.12096235895206 36.0 33.0 40.0 24.0 41.0 50 33.974080413048085 35.0 33.0 40.0 23.0 41.0 51 33.266999996383255 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 9.0 13 13.0 14 24.0 15 91.0 16 194.0 17 552.0 18 1254.0 19 2485.0 20 4172.0 21 6578.0 22 10068.0 23 14290.0 24 21162.0 25 29730.0 26 38267.0 27 44277.0 28 48529.0 29 54578.0 30 63714.0 31 76937.0 32 93818.0 33 120783.0 34 194107.0 35 285886.0 36 197823.0 37 248777.0 38 349816.0 39 580096.0 40 390.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.25341671666479 23.300542873068007 28.563586554879848 14.882453855387359 2 31.318579970398968 26.012055005029282 28.324037635020034 14.345327389551713 3 27.39995989434289 25.944301359855043 32.36377840298309 14.291960342818976 4 25.26387151401267 29.1062988787696 30.81424530436296 14.815584302854775 5 23.18886589801509 32.78107012984508 29.91484178559387 14.115222186545958 6 21.096218615213548 41.20972807319644 27.082771566133946 10.611281745456065 7 86.86190111263059 4.163031505445006 7.16014574669058 1.8149216352338244 8 87.19608813117684 3.647846611534114 6.544174291630818 2.6118909656582248 9 81.5791662765273 5.5088616222215885 9.435800206315074 3.476171894936038 10 44.24276862451661 23.95682091538148 16.999092197601133 14.801318262500768 11 36.236264917556355 26.18602032528983 21.2550739885076 16.322640768646217 12 31.051222318356135 22.393463822728172 27.55314903752451 19.002164821391183 13 22.078204423919207 31.324125642423912 28.823228489322773 17.77444144433411 14 19.917200705505927 32.26922067635498 29.839573352965548 17.974005265173542 15 18.997262125832908 24.42133122651378 39.01725869394602 17.5641479537073 16 20.585775672744266 21.407740713310055 37.64084700897394 20.365636604971733 17 20.50279152251603 23.414631009870895 28.807475565889618 27.27510190172346 18 24.199825833749593 24.01665791280998 30.436577002258858 21.34693925118157 19 27.671617451506513 26.51494297401531 25.553210924009424 20.26022865046875 20 28.49297970163481 24.70424087184394 25.42260632921922 21.38017309730203 21 25.00981543762385 26.78173802164982 26.68561303988423 21.522833500842097 22 24.818690682909324 24.663210936065234 26.30243925178436 24.215659129241082 23 23.496851625544974 28.45697301950188 25.049237932235908 22.99693742271724 24 23.025389131366925 24.896129161112622 31.646337224278632 20.432144483241824 25 21.846009547396807 26.23842290732258 29.53134650926067 22.384221036019945 26 21.01926236936024 29.21580580824754 27.704328879247814 22.060602943144403 27 22.11324664135215 27.92430720290368 27.537154997916353 22.425291157827818 28 20.631989606285416 27.90107967804561 31.72538314364858 19.741547572020394 29 21.116311629796655 25.42835293138999 30.458197085950285 22.99713835286307 30 22.0878490709191 26.846879574928256 28.988151953020925 22.07711940113172 31 26.228657702235186 26.044083270274754 25.16404941756379 22.563209609926272 32 26.437866170074507 26.02640141744162 26.14535206377362 21.39038034871025 33 24.913650269829095 27.609128176153046 24.65031122070288 22.82691033331498 34 21.300122527202927 27.628859516473657 27.461926751317193 23.609091205006212 35 22.0609646174069 26.866048310840547 28.138257622184614 22.93472944956794 36 26.360909924221204 26.61066609548924 25.94940498555915 21.079018994730404 37 22.800106251861116 29.136317842556764 27.436488994854987 20.627086910727137 38 23.341532622817546 28.719066301723938 25.669710222562287 22.269690852896225 39 22.748587762470027 28.712797281174012 26.513496276965327 22.025118679390634 40 24.297317140506834 26.715873119846396 25.98030804198797 23.006501697658802 41 20.828258172733214 25.651546137379157 27.514048031145784 26.006147658741845 42 23.549575695811047 27.136058240808346 25.008087438369703 24.3062786250109 43 23.745000355646358 25.958205725946552 27.04113883991775 23.255655078489344 44 22.746578461011715 28.499972070709727 26.6707843951219 22.082665073156658 45 21.189168900675003 29.521902792406607 25.552005343134436 23.73692296378395 46 23.381638279925433 28.22373330622116 26.468929970619993 21.925698443233415 47 23.231422902902114 26.656679098884556 27.252517353332046 22.859380644881284 48 24.10185229464236 24.850960064329797 27.81737217929238 23.229815461735466 49 22.25285290667558 25.47995179283941 28.090235317330986 24.176959983154017 50 21.216696330653864 27.970400578357328 27.850485467325342 22.962417623663463 51 21.252542268670126 29.16199671519398 25.801962444548305 23.783498571587593 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1562.0 1 2019.5 2 2477.0 3 13408.5 4 24340.0 5 16970.5 6 9601.0 7 9971.0 8 10341.0 9 11220.5 10 12100.0 11 12523.5 12 12947.0 13 13126.5 14 13306.0 15 13361.5 16 13417.0 17 12884.0 18 12351.0 19 12519.0 20 12687.0 21 12715.5 22 12744.0 23 13145.5 24 13547.0 25 14556.5 26 17342.0 27 19118.0 28 22538.0 29 25958.0 30 29361.5 31 32765.0 32 39211.0 33 45657.0 34 50235.5 35 54814.0 36 62340.0 37 69866.0 38 78105.5 39 86345.0 40 105929.0 41 125513.0 42 147637.5 43 169762.0 44 177194.0 45 184626.0 46 188354.0 47 192082.0 48 196606.0 49 201130.0 50 191747.5 51 182365.0 52 173373.0 53 164381.0 54 153756.5 55 143132.0 56 133639.0 57 124146.0 58 120603.5 59 117061.0 60 108045.5 61 99030.0 62 91786.0 63 84542.0 64 72506.0 65 60470.0 66 51647.0 67 42824.0 68 38056.5 69 33289.0 70 27993.0 71 22697.0 72 19062.5 73 15428.0 74 13360.5 75 9053.0 76 6813.0 77 5256.5 78 3700.0 79 2518.0 80 1336.0 81 1033.0 82 730.0 83 512.5 84 295.0 85 209.0 86 123.0 87 92.5 88 62.0 89 62.0 90 62.0 91 37.5 92 13.0 93 9.0 94 5.0 95 4.5 96 4.0 97 2.5 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2488427.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.03897510111789 #Duplication Level Percentage of deduplicated Percentage of total 1 78.7240005954486 18.137202895789308 2 6.789732837142476 3.128569715563361 3 2.3950482488875893 1.6553837091629153 4 1.4131014729571272 1.302256386032491 5 0.950986845910054 1.0954881132206185 6 0.7585189866307425 1.0485300028026512 7 0.5896619150479305 0.9509644325206736 8 0.48100649566826603 0.8865517341741723 9 0.43139720633830464 0.8945054545968016 >10 5.347050072481826 29.072588953476803 >50 1.6932795050358231 27.690478887938113 >100 0.42231864470986413 12.657914224141756 >500 0.0026571639144846453 0.45856612838002814 >1k 0.0010628655657938582 0.38889966512400215 >5k 0.0 0.0 >10k+ 1.77144260965643E-4 0.6320996970763506 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15488 0.6224012197263573 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3472 0.1395258932651028 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.037935611532908135 0.0 2 0.0 0.0 0.0 0.12369259777361362 0.0 3 0.0 0.0 0.0 0.20398428404771368 0.0 4 0.0 0.0 0.0 0.37734681387077057 0.0 5 0.0 0.0 0.0 0.6067286683515329 0.0 6 0.0 0.0 0.0 1.2642926635983294 0.0 7 0.0 0.0 0.0 1.6015338203612162 0.0 8 0.0 0.0 0.0 2.4938244119678816 0.0 9 0.0 0.0 0.0 2.984656572204047 0.0 10 0.0 0.0 0.0 3.594600122888877 0.0 11 0.0 0.0 0.0 4.007551758600916 0.0 12 0.0 0.0 0.0 4.394985265792406 0.0 13 0.0 0.0 0.0 4.641727484872974 0.0 14 0.0 0.0 0.0 4.769519057621542 0.0 15 0.0 0.0 0.0 4.867532782757943 0.0 16 0.0 0.0 0.0 5.002437282668931 0.0 17 0.0 0.0 0.0 5.153737682479735 0.0 18 0.0 0.0 0.0 5.391156742793741 0.0 19 0.0 0.0 0.0 5.5167782699673324 0.0 20 2.0093014583108125E-4 0.0 0.0 5.645775423590887 0.0 21 2.0093014583108125E-4 0.0 0.0 5.793378708718399 0.0 22 2.813022041635137E-4 0.0 0.0 5.953399476858272 0.0 23 2.813022041635137E-4 0.0 0.0 6.131825446356272 0.0 24 2.813022041635137E-4 0.0 0.0 6.283447334400407 0.0 25 2.813022041635137E-4 0.0 0.0 6.414011743161443 0.0 26 2.813022041635137E-4 0.0 0.0 6.53830713137255 0.0 27 2.813022041635137E-4 0.0 0.0 6.6701173070377395 0.0 28 2.813022041635137E-4 0.0 0.0 6.806508690027877 0.0 29 2.813022041635137E-4 0.0 0.0 6.953227882513732 0.0 30 2.813022041635137E-4 0.0 0.0 7.152269284974001 0.0 31 3.2148823332973E-4 0.0 0.0 7.303891173018136 0.0 32 3.2148823332973E-4 0.0 0.0 7.4741593785953935 0.0 33 3.2148823332973E-4 0.0 0.0 7.624334569589544 0.0 34 3.2148823332973E-4 0.0 0.0 7.776237759837842 0.0 35 3.2148823332973E-4 0.0 0.0 7.929105414786128 0.0 36 3.2148823332973E-4 0.0 0.0 8.085228138096879 0.0 37 3.2148823332973E-4 0.0 0.0 8.248584346657546 0.0 38 3.2148823332973E-4 0.0 0.0 8.412864833889039 0.0 39 3.2148823332973E-4 0.0 0.0 8.58457973651628 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 10145 0.0 40.963528 1 ACGCTAG 50 1.0822987E-9 40.5 1 GCTACGA 195 0.0 40.384617 10 ACCCGCT 295 0.0 39.66102 34 TATGGGC 1095 0.0 39.246574 4 TATTACG 70 0.0 38.571426 1 CGCGTAA 35 6.2512263E-6 38.571426 31 GACCGAT 1815 0.0 38.429752 9 GCGATCT 245 0.0 37.65306 9 AGGGTAC 1170 0.0 37.5 6 GTAGGGC 1210 0.0 37.190083 4 GGGCGAT 5430 0.0 37.00276 7 TAACGGG 590 0.0 36.991528 3 GGCGATT 1565 0.0 36.80511 8 AGGGCGA 2790 0.0 36.6129 6 CCGACGG 80 0.0 36.5625 2 GGCACCG 1480 0.0 36.334457 8 GGTACCT 1255 0.0 36.215137 8 TAGCATA 1085 0.0 36.08295 30 ATAGGGC 1385 0.0 36.064983 4 >>END_MODULE