SRR1547660_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547660_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1068825
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4340	0.40605337637124883	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2195	0.20536570533062007	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	60	0.0	45.000004	1
ACACGAA	25	3.890621E-5	45.000004	42
GTCGACA	20	7.0330634E-4	45.000004	40
AAACGCG	20	7.0330634E-4	45.000004	1
TACTACG	20	7.0330634E-4	45.000004	1
ATCGGTA	20	7.0330634E-4	45.000004	35
ATCGGGT	20	7.0330634E-4	45.000004	4
CAGTACG	40	6.8139343E-9	45.000004	1
TAATGCG	50	2.1827873E-11	45.000004	1
TACACCG	20	7.0330634E-4	45.000004	1
CGCTTAA	20	7.0330634E-4	45.000004	37
GCGTAAG	85	0.0	42.35294	1
GCGATCG	75	0.0	42.0	9
AAGGGTA	570	0.0	41.842106	5
CGTTCGG	65	0.0	41.53846	45
TAGAACG	55	6.184564E-11	40.909092	1
CGAATAT	55	6.184564E-11	40.909092	14
TGCATAG	95	0.0	40.263157	1
ACGTAAG	45	1.9281288E-8	40.0	1
CGTAAGG	210	0.0	39.642857	2