##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547659_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2899309 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.40509652472365 31.0 31.0 33.0 30.0 34.0 2 31.811610973511275 31.0 31.0 34.0 30.0 34.0 3 31.94491411574275 31.0 31.0 34.0 30.0 34.0 4 35.638798072230315 37.0 35.0 37.0 33.0 37.0 5 35.52028121183358 37.0 35.0 37.0 33.0 37.0 6 35.5710343395616 37.0 35.0 37.0 33.0 37.0 7 35.986252931301905 37.0 35.0 37.0 35.0 37.0 8 36.004077868209286 37.0 35.0 37.0 35.0 37.0 9 37.746504080799944 39.0 37.0 39.0 35.0 39.0 10 37.100153174428804 39.0 37.0 39.0 33.0 39.0 11 36.8321596628714 39.0 37.0 39.0 32.0 39.0 12 36.23878413787561 38.0 35.0 39.0 32.0 39.0 13 36.00246748449372 38.0 35.0 39.0 31.0 39.0 14 37.060454059915656 39.0 35.0 41.0 32.0 41.0 15 37.250130979485114 39.0 35.0 41.0 32.0 41.0 16 37.34692473275529 39.0 35.0 41.0 32.0 41.0 17 37.28656448829704 39.0 35.0 41.0 32.0 41.0 18 37.192570712538746 39.0 35.0 41.0 32.0 41.0 19 37.15002091877754 39.0 35.0 41.0 32.0 41.0 20 37.027519315809386 39.0 35.0 41.0 32.0 41.0 21 36.92597546518843 38.0 35.0 41.0 32.0 41.0 22 36.81691361631341 38.0 35.0 41.0 31.0 41.0 23 36.70597649301954 38.0 35.0 41.0 31.0 41.0 24 36.59869334382779 38.0 35.0 40.0 31.0 41.0 25 36.46919179707992 38.0 35.0 40.0 31.0 41.0 26 36.29980281508456 38.0 35.0 40.0 31.0 41.0 27 36.25679360150988 38.0 35.0 40.0 30.0 41.0 28 36.3035685399521 38.0 35.0 40.0 30.0 41.0 29 36.29799721243924 38.0 35.0 40.0 30.0 41.0 30 36.31799680544571 38.0 35.0 40.0 30.0 41.0 31 36.182190308104445 38.0 35.0 40.0 30.0 41.0 32 35.972523453002076 38.0 35.0 40.0 30.0 41.0 33 35.8780702574303 38.0 35.0 40.0 30.0 41.0 34 35.68530708523996 38.0 35.0 40.0 29.0 41.0 35 35.589779495735016 38.0 35.0 40.0 29.0 41.0 36 35.42987380786249 38.0 35.0 40.0 27.0 41.0 37 35.17669865474843 38.0 34.0 40.0 26.0 41.0 38 35.27954384993114 38.0 34.0 40.0 27.0 41.0 39 35.19587529304396 37.0 34.0 40.0 27.0 41.0 40 35.06867601901005 37.0 34.0 40.0 26.0 41.0 41 35.03966151934823 37.0 34.0 40.0 26.0 41.0 42 34.993076281279436 37.0 34.0 40.0 26.0 41.0 43 34.92471550979906 37.0 34.0 40.0 26.0 41.0 44 34.75448494796519 37.0 34.0 40.0 25.0 41.0 45 34.71965009593665 37.0 34.0 40.0 25.0 41.0 46 34.530086306771715 36.0 34.0 40.0 24.0 41.0 47 34.559264983484 36.0 34.0 40.0 25.0 41.0 48 34.395632200638154 36.0 34.0 40.0 24.0 41.0 49 34.38397080131852 36.0 34.0 40.0 24.0 41.0 50 34.23918561284775 36.0 33.0 40.0 24.0 41.0 51 33.51933133032733 35.0 33.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 1.0 11 5.0 12 5.0 13 13.0 14 24.0 15 80.0 16 249.0 17 649.0 18 1358.0 19 2803.0 20 4759.0 21 7402.0 22 10970.0 23 16034.0 24 23125.0 25 31775.0 26 41763.0 27 48803.0 28 54201.0 29 62255.0 30 73197.0 31 88282.0 32 109617.0 33 140462.0 34 233344.0 35 370318.0 36 219100.0 37 269302.0 38 392600.0 39 696343.0 40 468.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.70993191826052 24.96888051601261 28.372415634208014 13.948771931518856 2 31.13459103531221 26.356245574376512 28.788480289613837 13.720683100697443 3 28.55749421672543 26.01054251202614 31.093132880972675 14.338830390275753 4 24.968432133311765 28.690284478129097 31.100238022232197 15.241045366326942 5 22.667677022352567 33.399544512157895 29.42721869245396 14.505559773035575 6 20.94723259921588 41.91888481013925 26.622515916723604 10.511366673921268 7 87.14090150446192 4.550670521838134 6.645480009202193 1.6629479644977476 8 87.88445798636847 3.5716096490577582 6.0836909760222175 2.460241388551548 9 81.95925304960596 5.8464275453220065 8.744428413804807 3.449890991267229 10 46.20514750238764 23.528675280903137 16.521867796775027 13.744309419934197 11 38.24897587666579 24.528430739876296 21.438522075432456 15.784071308025464 12 32.85182779758901 23.056838715707777 26.630483332407824 17.460850154295386 13 21.7281428092004 34.67595209755152 27.508347678705512 16.08755741454257 14 18.65568657911247 35.929837074972006 28.394731296319225 17.0197450495963 15 17.259491830639647 25.60127257908695 40.90253919123488 16.23669639903853 16 18.983730261245007 21.44200566410824 39.47819980553987 20.09606426910688 17 18.925440510135346 23.226051448810733 28.44315662801033 29.40535141304359 18 22.017004741474608 24.43020043741457 32.055155211121 21.49763960998983 19 26.78907284459849 26.848673252833695 25.916796036572855 20.445457865994968 20 28.329060476134142 25.062006153880112 25.747755758354835 20.86117761163091 21 23.106229794754544 28.981664251723426 27.03806320747461 20.87404274604742 22 23.67429618574633 26.143056845613906 25.648387253652512 24.53425971498726 23 21.10827097077269 29.720840379552506 25.223699853999694 23.947188795675107 24 21.421966406478234 25.766691304721228 33.806848459408776 19.004493829391762 25 19.693451094726363 27.406944206360894 31.21467908387826 21.68492561503448 26 20.013389397266728 31.08657959534496 27.389181353212095 21.51084965417622 27 19.871252081099325 31.459323583653898 27.471200896489474 21.198223438757307 28 18.848146230705318 28.493375490504807 33.41509994277947 19.24337833601041 29 19.357508978863585 25.7831090097675 32.10226988568656 22.75711212568236 30 20.714625450409045 29.046024414782973 29.37248151197406 20.866868622833923 31 25.824705128014987 27.35227600783497 25.79731929228654 21.025699571863502 32 26.31940921095337 26.81076766912392 26.793694635514875 20.07612848440784 33 26.021752079547227 27.487998002282616 25.575438837322963 20.914811080847194 34 20.607013602206596 27.1071486343815 28.338752440667758 23.947085322744144 35 21.294625719438667 26.503349591230187 29.895157777249683 22.306866912081468 36 26.500107439393318 26.40480886997557 26.44554271379836 20.649540976832757 37 21.848688773773336 29.97065852587634 28.76009421555274 19.420558484797585 38 21.245131167460936 30.446392571471343 26.321306214687706 21.987170046380015 39 20.776881663872324 30.13742239961315 27.325648973600263 21.760046962914267 40 22.99203016994739 26.87812854718141 26.78155381161511 23.348287471256082 41 19.256484907265833 25.258639213688504 27.68618315605546 27.798692722990204 42 21.668852819758087 27.431053399275484 25.845330732253792 25.05476304871264 43 22.483150295466956 26.75354713830089 27.181994054445386 23.581308511786776 44 20.739148535047487 29.50099489223122 27.74350715980946 22.016349412911833 45 19.244413065320046 32.13989954158043 25.521529440290774 23.094157952808754 46 22.390473040300293 29.438635205836977 26.635898415794934 21.534993338067796 47 22.009106307744364 27.22717723429962 27.946314104498693 22.817402353457325 48 23.09850381590924 25.01713339281877 28.885124007134117 22.999238784137876 49 21.48408465603356 24.87727248113257 29.715873678866238 23.92276918396763 50 20.364714488866138 29.607261592331135 28.332578555786913 21.695445363015807 51 19.555176767981614 30.30487609288972 26.353141386447597 23.78680575268107 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2578.0 1 2871.5 2 3165.0 3 14607.5 4 26050.0 5 17890.0 6 9730.0 7 10535.5 8 11341.0 9 12664.0 10 13987.0 11 15172.5 12 16358.0 13 16778.5 14 17199.0 15 16984.5 16 16770.0 17 16154.0 18 15538.0 19 15131.0 20 14724.0 21 15138.5 22 15553.0 23 13893.0 24 12233.0 25 15894.5 26 22588.5 27 25621.0 28 29529.5 29 33438.0 30 37361.0 31 41284.0 32 47921.5 33 54559.0 34 61448.0 35 68337.0 36 77619.0 37 86901.0 38 100843.0 39 114785.0 40 141894.0 41 169003.0 42 195691.5 43 222380.0 44 232925.5 45 243471.0 46 252141.0 47 260811.0 48 255751.5 49 250692.0 50 236611.0 51 222530.0 52 208114.0 53 193698.0 54 174716.0 55 155734.0 56 143220.0 57 130706.0 58 120595.0 59 110484.0 60 99230.5 61 87977.0 62 80245.5 63 72514.0 64 62189.5 65 51865.0 66 44428.5 67 36992.0 68 30071.5 69 23151.0 70 20303.0 71 17455.0 72 15175.0 73 12895.0 74 10108.0 75 5838.0 76 4355.0 77 3694.5 78 3034.0 79 2235.5 80 1437.0 81 967.5 82 498.0 83 392.0 84 286.0 85 243.5 86 201.0 87 124.5 88 48.0 89 47.0 90 46.0 91 28.0 92 10.0 93 6.0 94 2.0 95 1.5 96 1.0 97 3.0 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2899309.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.739672457268917 #Duplication Level Percentage of deduplicated Percentage of total 1 80.2538303517359 16.64438154936229 2 7.389765365080245 3.0652262641566903 3 2.4269540746637674 1.5100269773208208 4 1.2970380972499724 1.0760058120625493 5 0.8154449983434269 0.8456031086280433 6 0.5809262164951171 0.7228931671169531 7 0.4586632545308427 0.6658767967008248 8 0.3549737477552134 0.5889631407497858 9 0.2971577122947557 0.5546658259030126 >10 3.5705505717394823 17.69882352097242 >50 1.4406884503244424 21.76166868570547 >100 1.1094554053464938 33.23176832814725 >500 0.0025287524668195023 0.3390076983438126 >1k 0.0016858349778796679 0.49529528204810747 >5k 1.685834977879668E-4 0.18499275288130287 >10k+ 1.685834977879668E-4 0.6148010899007428 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17584 0.6064893393563777 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 5291 0.18249175924332314 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.898195397593012E-5 0.0 0.0 0.04356210393579987 0.0 2 6.898195397593012E-5 0.0 0.0 0.17628338338548943 0.0 3 6.898195397593012E-5 0.0 0.0 0.27065069642456185 0.0 4 6.898195397593012E-5 0.0 0.0 0.4720090200803019 0.0 5 6.898195397593012E-5 0.0 0.0 0.7973624060077763 0.0 6 6.898195397593012E-5 0.0 0.0 1.4785592015200864 0.0 7 6.898195397593012E-5 0.0 0.0 1.7835974020016494 0.0 8 6.898195397593012E-5 0.0 0.0 2.6098977377023282 0.0 9 6.898195397593012E-5 0.0 0.0 3.0166498293214006 0.0 10 1.3796390795186024E-4 0.0 0.0 3.625863955859827 0.0 11 1.3796390795186024E-4 0.0 0.0 4.069693847740962 0.0 12 1.3796390795186024E-4 0.0 0.0 4.458062248625448 0.0 13 1.3796390795186024E-4 0.0 0.0 4.667077569172517 0.0 14 1.3796390795186024E-4 0.0 0.0 4.764273142324602 0.0 15 1.3796390795186024E-4 0.0 0.0 4.864055538750785 0.0 16 1.3796390795186024E-4 0.0 0.0 5.040545867998202 0.0 17 1.3796390795186024E-4 0.0 0.0 5.227211035457069 0.0 18 1.3796390795186024E-4 0.0 0.0 5.51262387003248 0.0 19 1.3796390795186024E-4 0.0 0.0 5.63668791425819 0.0 20 2.069458619277904E-4 0.0 0.0 5.771547634281134 0.0 21 2.069458619277904E-4 0.0 0.0 5.93534528399698 0.0 22 3.1041879289168554E-4 0.0 0.0 6.109179808016324 0.0 23 3.1041879289168554E-4 0.0 0.0 6.309261965523509 0.0 24 3.1041879289168554E-4 0.0 0.0 6.478957572304298 0.0 25 3.1041879289168554E-4 0.0 0.0 6.622612491459172 0.0 26 3.1041879289168554E-4 0.0 0.0 6.751229344647293 0.0 27 3.1041879289168554E-4 0.0 0.0 6.886054573693249 0.0 28 3.1041879289168554E-4 0.0 0.0 7.023811535783182 0.0 29 3.1041879289168554E-4 0.0 0.0 7.177986202919385 0.0 30 3.1041879289168554E-4 0.0 0.0 7.385104519732115 0.0 31 5.17364654819476E-4 0.0 0.0 7.555558928006639 0.0 32 5.17364654819476E-4 0.0 0.0 7.7137000574964585 0.0 33 5.17364654819476E-4 0.0 0.0 7.869840710320976 0.0 34 5.17364654819476E-4 0.0 0.0 8.030016807453086 0.0 35 5.17364654819476E-4 0.0 0.0 8.2211313109434 0.0 36 5.17364654819476E-4 0.0 0.0 8.381686808822378 0.0 37 5.17364654819476E-4 0.0 0.0 8.54979583066172 0.0 38 5.17364654819476E-4 0.0 0.0 8.719250000603592 0.0 39 5.17364654819476E-4 0.0 0.0 8.896361167436792 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATAA 25 3.8922815E-5 45.0 36 CGTTTTT 9950 0.0 41.811558 1 ACGTATG 70 0.0 41.785713 1 TACGAAT 280 0.0 40.17857 12 TACGGGA 770 0.0 40.032467 4 GCGTAAT 45 1.9301297E-8 40.0 23 CGTAAGG 395 0.0 39.3038 2 GTACGGG 1070 0.0 39.11215 3 CGTTAGG 455 0.0 39.065933 2 GCGATCG 145 0.0 38.793106 9 GCTACGA 290 0.0 38.793106 10 TAGTACG 175 0.0 38.571426 1 AGGGCGA 3500 0.0 38.507145 6 GGGCGAT 7160 0.0 38.023743 7 TAAACGG 190 0.0 37.894737 2 AGTACGG 415 0.0 37.409637 2 GCGTTAG 265 0.0 37.35849 1 GCGAGAC 205 0.0 37.317074 21 ATACGGG 935 0.0 36.57754 3 TAGGGAC 2250 0.0 36.4 5 >>END_MODULE