##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547650_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 3057021 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.41031121474141 31.0 31.0 33.0 30.0 34.0 2 31.839856513906838 31.0 31.0 34.0 30.0 34.0 3 31.953441602134887 31.0 31.0 34.0 30.0 34.0 4 35.66461434187073 37.0 35.0 37.0 33.0 37.0 5 35.5566046160625 37.0 35.0 37.0 33.0 37.0 6 35.6047433105628 37.0 35.0 37.0 33.0 37.0 7 36.02985717140968 37.0 35.0 37.0 35.0 37.0 8 36.052400032580735 37.0 35.0 37.0 35.0 37.0 9 37.78407999159967 39.0 38.0 39.0 35.0 39.0 10 37.02788237306842 39.0 37.0 39.0 33.0 39.0 11 36.90604578771294 39.0 37.0 39.0 33.0 39.0 12 36.54948461263432 39.0 35.0 39.0 32.0 39.0 13 36.39398846131577 39.0 35.0 39.0 32.0 39.0 14 37.490199772916185 40.0 36.0 41.0 32.0 41.0 15 37.618989532620155 40.0 36.0 41.0 32.0 41.0 16 37.66725907345746 40.0 36.0 41.0 33.0 41.0 17 37.57829795739055 39.0 35.0 41.0 32.0 41.0 18 37.451072465645474 39.0 36.0 41.0 32.0 41.0 19 37.37560226115555 39.0 36.0 41.0 32.0 41.0 20 37.24639313894147 39.0 35.0 41.0 32.0 41.0 21 37.15277683731973 39.0 35.0 41.0 32.0 41.0 22 37.049593705767805 39.0 35.0 41.0 32.0 41.0 23 36.93190854756968 39.0 35.0 41.0 32.0 41.0 24 36.827216103520385 38.0 35.0 41.0 31.0 41.0 25 36.70656367751481 38.0 35.0 41.0 31.0 41.0 26 36.571533201767345 38.0 35.0 40.0 31.0 41.0 27 36.54785753843366 38.0 35.0 41.0 31.0 41.0 28 36.58074609235592 38.0 35.0 41.0 31.0 41.0 29 36.55878549738455 38.0 35.0 41.0 31.0 41.0 30 36.5554135872799 38.0 35.0 41.0 31.0 41.0 31 36.40202635179804 38.0 35.0 41.0 30.0 41.0 32 36.12220001105651 38.0 35.0 41.0 30.0 41.0 33 35.93317808415448 38.0 35.0 41.0 29.0 41.0 34 35.65670795195715 38.0 35.0 41.0 27.0 41.0 35 35.489078419808045 38.0 35.0 41.0 27.0 41.0 36 35.31224777324068 38.0 35.0 40.0 26.0 41.0 37 35.0798434161885 38.0 34.0 40.0 24.0 41.0 38 35.14625283895662 38.0 34.0 40.0 25.0 41.0 39 35.0483572078831 38.0 34.0 40.0 24.0 41.0 40 34.925201364334754 38.0 34.0 40.0 24.0 41.0 41 34.875906642447006 38.0 34.0 40.0 24.0 41.0 42 34.825765344758835 38.0 34.0 40.0 23.0 41.0 43 34.74644204275993 38.0 34.0 40.0 23.0 41.0 44 34.582727433014036 37.0 34.0 40.0 23.0 41.0 45 34.52816025797664 37.0 34.0 40.0 23.0 41.0 46 34.34849057301209 37.0 34.0 40.0 23.0 41.0 47 34.37061505302057 37.0 33.0 40.0 23.0 41.0 48 34.2062743435521 37.0 33.0 40.0 23.0 41.0 49 34.191457631465404 36.0 33.0 40.0 23.0 41.0 50 34.0462597411009 36.0 33.0 40.0 23.0 41.0 51 33.3722787641956 35.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 5.0 13 11.0 14 24.0 15 92.0 16 237.0 17 654.0 18 1497.0 19 2903.0 20 4866.0 21 7822.0 22 11959.0 23 17558.0 24 26125.0 25 38739.0 26 52602.0 27 59912.0 28 61926.0 29 65570.0 30 73710.0 31 87351.0 32 108127.0 33 136442.0 34 214340.0 35 321931.0 36 237436.0 37 295598.0 38 440656.0 39 788490.0 40 436.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.630316572898913 24.445334199536084 28.969640705772058 16.95470852179295 2 32.50213197750359 25.161521625137674 28.638926588989737 13.697419808368997 3 27.020128419137457 25.252100001929982 34.01177159070873 13.715999988223828 4 23.77821415031169 28.72871988776001 33.09319759334332 14.399868368584972 5 22.551006355533705 31.823432027454178 31.80985671998982 13.815704897022297 6 20.507808091602904 40.64182090996431 28.107461479656177 10.742909518776612 7 86.82400284459936 3.3718119698883324 8.377567573137377 1.4266176123749232 8 87.63037610798224 2.419087078564393 7.910446150026447 2.0400906634269114 9 81.40964684246526 4.090092936882018 11.277972902377838 3.222287318274883 10 36.0977893184247 22.119573270841123 27.498633473567896 14.28400393716628 11 32.91541013293661 24.27958460213391 25.461944814903138 17.34306045002635 12 29.024399897809012 24.04693981493748 28.1337288818101 18.794931405443403 13 22.10501661584922 30.546273643524202 30.302670475603538 17.04603926502304 14 19.790573895305265 31.91499175177403 30.53750693894481 17.75692741397589 15 18.933137848905844 24.52115965183098 39.45880646551005 17.08689603375312 16 21.237799805758613 21.908845245093183 37.913576648639314 18.939778300508895 17 20.741663207416632 23.23657573827592 30.696288968901424 25.32547208540602 18 23.17897063840909 23.169026316796646 32.78011502047254 20.871888024321716 19 25.52798950350684 25.79318231703348 28.749295474254183 19.929532705205492 20 27.701608853848242 24.9332929018152 27.573477578335247 19.791620666001315 21 23.912527915248212 27.085060913876614 29.351875567750437 19.65053560312474 22 23.631633541280873 23.640989054376792 29.36378258441797 23.363594819924362 23 21.155693729287435 28.037164285099774 28.236737660617965 22.570404324994822 24 20.920497438519394 26.07891800547003 33.94674096121682 19.053843594793754 25 20.63947221821505 26.743192146864548 31.81724953803065 20.80008609688975 26 20.047163562173765 29.69518364446957 29.185569873415986 21.072082919940687 27 20.273135186182888 28.27523919528194 29.975620056257384 21.476005562277788 28 18.76673401981864 27.88865369259812 33.94772230874436 19.396889978838878 29 19.811018635462432 25.407316469203188 33.38413442367586 21.39753047165852 30 21.86717068675681 26.58012489937099 32.205241638837286 19.347462775034913 31 25.255436583523633 26.47080278480259 28.365294186726224 19.90846644494755 32 25.692528772291716 26.057066667190053 28.49587883105808 19.754525729460152 33 24.021261221300083 27.782766294376128 27.477338232220188 20.7186342521036 34 20.845522487415035 27.36955356211161 30.3721171689694 21.412806781503953 35 20.961190649328216 27.790028266079954 30.426058571400066 20.822722513191763 36 24.16960825588048 27.7029173172183 28.66156300529175 19.46591142160947 37 21.22363568977773 29.349422198931574 29.593614175368764 19.833327935921933 38 21.277609803792647 29.24755832557251 28.572783765633275 20.90204810500157 39 20.80057677065352 29.662472060218104 28.165230137444265 21.371721031684114 40 22.846130268650427 27.334813859636554 28.012826866416685 21.80622900529633 41 19.61962315600711 26.81885404123819 28.63784710670944 24.923675696045265 42 22.600302713000666 27.641059711398775 27.17243355541228 22.58620402018828 43 22.266448284130202 27.09772029698193 28.39771136671943 22.238120052168433 44 21.92085039651347 28.902810939146313 28.229541112082646 20.946797552257575 45 20.27051825944277 30.30116574272797 27.081070100597938 22.347245897231325 46 22.81564307212806 28.32734874899453 27.65725194560325 21.199756233274158 47 21.83023930813691 27.706482879901706 28.81723743474448 21.646040377216906 48 22.57455869619476 26.17751072040395 29.234669961377435 22.013260622023857 49 21.519773662006248 26.24846214664538 29.5296303165729 22.702133874775477 50 20.7096712780187 28.113251430068686 29.519195321196683 21.657881970715938 51 20.319160385224702 29.28278870181134 27.930753501529757 22.467297411434203 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2173.0 1 2603.5 2 3034.0 3 23721.0 4 44408.0 5 30798.5 6 17189.0 7 17943.5 8 18698.0 9 19889.0 10 21080.0 11 21516.5 12 21953.0 13 21772.0 14 21591.0 15 20911.0 16 20231.0 17 19371.0 18 18511.0 19 18231.5 20 17952.0 21 17933.5 22 17915.0 23 18892.0 24 19869.0 25 20198.0 26 25399.0 27 30271.0 28 34245.5 29 38220.0 30 43469.0 31 48718.0 32 56983.0 33 65248.0 34 75845.5 35 86443.0 36 93292.0 37 100141.0 38 112506.5 39 124872.0 40 147218.0 41 169564.0 42 195211.5 43 220859.0 44 236614.5 45 252370.0 46 257727.5 47 263085.0 48 253218.0 49 243351.0 50 228394.5 51 213438.0 52 205453.0 53 197468.0 54 179105.0 55 160742.0 56 148414.5 57 136087.0 58 122590.0 59 109093.0 60 101218.0 61 93343.0 62 81935.5 63 70528.0 64 61871.0 65 53214.0 66 43843.5 67 34473.0 68 30221.0 69 25969.0 70 21902.0 71 17835.0 72 15628.5 73 13422.0 74 11588.5 75 8111.0 76 6467.0 77 4937.0 78 3407.0 79 2584.5 80 1762.0 81 1404.0 82 1046.0 83 721.0 84 396.0 85 262.0 86 128.0 87 125.0 88 122.0 89 75.5 90 29.0 91 20.0 92 11.0 93 10.5 94 10.0 95 6.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 3057021.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.87042672020838 #Duplication Level Percentage of deduplicated Percentage of total 1 78.57848201203508 17.971234146414606 2 6.64289887843089 3.0385186401781623 3 2.43239442582207 1.6688969541122096 4 1.3558329318486788 1.2403391085076194 5 0.9697234027149849 1.1088994010332092 6 0.7231165300077151 0.992279016582769 7 0.6338635571187288 1.014771102358615 8 0.5003591731177459 0.9154742242058771 9 0.4556268051127839 0.9378341512285129 >10 5.65538493873328 30.801017463391815 >50 1.643997026823573 26.580286763591204 >100 0.40542014596653836 12.140098320564311 >500 0.0015950947473589246 0.2517485970543697 >1k 0.001160068907170127 0.4196915420528321 >5k 0.0 0.0 >10k+ 1.4500861339626587E-4 0.9189105687238144 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 27708 0.9063725764396122 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3212 0.10506960861570791 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.542316850293144E-5 0.0 0.0 0.03601545426086376 0.0 2 6.542316850293144E-5 0.0 0.0 0.12747704382796193 0.0 3 6.542316850293144E-5 0.0 0.0 0.21589645605967378 0.0 4 6.542316850293144E-5 0.0 0.0 0.3424902871128461 0.0 5 6.542316850293144E-5 0.0 0.0 0.5401991023287049 0.0 6 6.542316850293144E-5 0.0 0.0 1.1622753000388286 0.0 7 6.542316850293144E-5 0.0 0.0 1.4697641920026066 0.0 8 6.542316850293144E-5 0.0 0.0 2.295568136430859 0.0 9 6.542316850293144E-5 0.0 0.0 2.8035136166876184 0.0 10 6.542316850293144E-5 0.0 0.0 3.4849613398141526 0.0 11 6.542316850293144E-5 0.0 0.0 3.8985338995054337 0.0 12 6.542316850293144E-5 0.0 0.0 4.253781704476351 0.0 13 6.542316850293144E-5 0.0 0.0 4.4746830329264995 0.0 14 6.542316850293144E-5 0.0 0.0 4.593556930096326 0.0 15 6.542316850293144E-5 0.0 0.0 4.693490819984554 0.0 16 6.542316850293144E-5 0.0 0.0 4.843408010609021 0.0 17 6.542316850293144E-5 0.0 0.0 4.9935541823232485 0.0 18 6.542316850293144E-5 0.0 0.0 5.210431985910467 0.0 19 6.542316850293144E-5 0.0 0.0 5.322403738803233 0.0 20 9.813475275439718E-5 0.0 0.0 5.445235737667487 0.0 21 9.813475275439718E-5 0.0 0.0 5.576834441111134 0.0 22 9.813475275439718E-5 0.0 0.0 5.732247177889848 0.0 23 9.813475275439718E-5 0.0 0.0 5.898585583808551 0.0 24 9.813475275439718E-5 0.0 0.0 6.039572511932368 0.0 25 9.813475275439718E-5 0.0 0.0 6.166885997839072 0.0 26 9.813475275439718E-5 0.0 0.0 6.287068358378958 0.0 27 9.813475275439718E-5 0.0 0.0 6.416671655183265 0.0 28 9.813475275439718E-5 0.0 0.0 6.544573949606496 0.0 29 9.813475275439718E-5 0.0 0.0 6.683500047922471 0.0 30 9.813475275439718E-5 0.0 0.0 6.883335116114675 0.0 31 1.308463370058629E-4 0.0 0.0 7.031616727526569 0.0 32 1.308463370058629E-4 0.0 0.0 7.206492856934905 0.0 33 1.308463370058629E-4 0.0 0.0 7.346694707036687 0.0 34 1.308463370058629E-4 0.0 0.0 7.490887370417148 0.0 35 1.308463370058629E-4 0.0 0.0 7.649669400373763 0.0 36 1.308463370058629E-4 0.0 0.0 7.797820165448651 0.0 37 1.308463370058629E-4 0.0 0.0 7.946788720129826 0.0 38 1.308463370058629E-4 0.0 0.0 8.112800010206014 0.0 39 1.308463370058629E-4 0.0 0.0 8.339949251248193 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAATC 25 3.8923314E-5 45.0 29 CGTTTTT 18245 0.0 43.211838 1 AGGGCGA 4035 0.0 38.921936 6 GGGCGAT 8050 0.0 38.291924 7 CGTAAGG 465 0.0 38.225803 2 ACGGGTA 740 0.0 38.006756 5 CGGGTAT 500 0.0 37.800003 6 TACGGGT 640 0.0 37.617188 4 TAGGGTA 2420 0.0 37.561985 5 TAGGGTC 2220 0.0 37.094597 5 TGGGCGA 2190 0.0 37.08904 6 CGTTAGG 540 0.0 37.083336 2 GTTTTTT 21710 0.0 36.936897 2 TAAGGGT 2690 0.0 36.88662 4 TAGGGCG 1805 0.0 36.77285 5 ATAGGGT 2880 0.0 36.640625 4 CACGACC 1870 0.0 36.577538 27 AGGGTAC 2170 0.0 36.497696 6 TAGGGAC 2380 0.0 36.39706 5 TATACTA 1785 0.0 36.302525 44 >>END_MODULE