SRR1547648_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547648_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1342354
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37600	2.801049499610386	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2732	0.2035230647057334	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2530	0.18847487324506054	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTT	2522	0.18787890526642004	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCT	1902	0.1416913869217807	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1711	0.12746265143173857	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1552	0.11561778785625848	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCTG	1551	0.11554329185892842	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTC	1548	0.11531980386693824	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.1657743E-6	45.000004	1
CGCATCG	30	2.1657743E-6	45.000004	21
GATCCGC	30	2.1657743E-6	45.000004	9
CGTTCGG	30	2.1657743E-6	45.000004	45
TACATCG	30	2.1657743E-6	45.000004	16
TACGCCT	30	2.1657743E-6	45.000004	34
TCCACGG	35	1.2121382E-7	45.000004	2
TCGAGCG	30	2.1657743E-6	45.000004	1
CGATAGA	65	0.0	45.000004	10
TCCGGAC	20	7.0337113E-4	45.0	16
CGTGGTC	20	7.0337113E-4	45.0	22
AGTCCGC	25	3.891157E-5	45.0	40
GTCGACC	20	7.0337113E-4	45.0	17
GGTCGAC	20	7.0337113E-4	45.0	9
CGTGCCC	20	7.0337113E-4	45.0	20
GAGTCGA	20	7.0337113E-4	45.0	15
ACTTCGA	20	7.0337113E-4	45.0	23
CATCTCG	40	6.8157533E-9	45.0	22
TGCGGTC	20	7.0337113E-4	45.0	29
CGATTAC	25	3.891157E-5	45.0	10