SRR1547647_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547647_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1368636
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10519	0.768575428382711	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5117	0.3738758881104983	No Hit
GAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCT	2918	0.21320497195748178	Illumina PCR Primer Index 10 (95% over 21bp)
AAGAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTT	2666	0.19479247951975542	No Hit
AAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCT	2567	0.18755900034779152	Illumina PCR Primer Index 10 (95% over 21bp)
GAGAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTT	2510	0.18339426991544866	No Hit
TAGAGCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTT	1987	0.1451810415625484	No Hit
GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	1458	0.10652942053255943	Illumina PCR Primer Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGCT	1370	0.10009966126859152	Illumina PCR Primer Index 10 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	30	2.165807E-6	45.000004	1
CGTATCG	30	2.165807E-6	45.000004	24
CGACGGT	145	0.0	45.000004	28
TAGCACG	55	1.8189894E-12	45.000004	1
TACGATA	30	2.165807E-6	45.000004	32
TATTACG	30	2.165807E-6	45.000004	1
TCCGTGA	60	0.0	45.000004	35
GTAAGCG	30	2.165807E-6	45.000004	1
CCCGGAG	30	2.165807E-6	45.000004	18
GTACGAT	30	2.165807E-6	45.000004	31
ACGCGAG	45	3.8562575E-10	45.0	1
TCACGAT	20	7.033759E-4	45.0	18
TCTGCGC	20	7.033759E-4	45.0	16
GCCCCTA	20	7.033759E-4	45.0	45
AACGTTG	35	1.2121563E-7	45.0	1
CTAGAAC	35	1.2121563E-7	45.0	24
CGTGGAC	20	7.033759E-4	45.0	41
GTCGCGA	20	7.033759E-4	45.0	37
GCCCACG	25	3.8911967E-5	45.0	40
CATATCC	45	3.8562575E-10	45.0	33