SRR1547646_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547646_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1404574
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9778	0.696154136414315	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3465	0.24669401540965444	No Hit
GAGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	1582	0.11263201511632707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.165847E-6	45.000004	1
ATGTACG	30	2.165847E-6	45.000004	1
TCGTAAT	30	2.165847E-6	45.000004	30
CAATACG	30	2.165847E-6	45.000004	1
CTTAACG	20	7.033823E-4	45.0	1
CTCGTTG	35	1.2121927E-7	45.0	1
CGTATCG	20	7.033823E-4	45.0	33
CACGGTA	20	7.033823E-4	45.0	37
CTCCGAC	25	3.891249E-5	45.0	13
CGACGGT	100	0.0	45.0	28
CGGTTTA	20	7.033823E-4	45.0	37
TCTTACG	25	3.891249E-5	45.0	17
TTCACCG	20	7.033823E-4	45.0	29
CGTCTAC	20	7.033823E-4	45.0	17
CGACATC	20	7.033823E-4	45.0	21
ATCGTTA	20	7.033823E-4	45.0	19
ATACTCG	80	0.0	45.0	44
CCCGTTC	25	3.891249E-5	45.0	35
ACTACGC	25	3.891249E-5	45.0	21
GAACGCG	25	3.891249E-5	45.0	1