SRR1547644_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547644_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1340582
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8250	0.6154043542282381	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6107	0.4555484110632546	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2419	0.18044401610643734	No Hit
GAGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	1885	0.14061057063275503	No Hit
AAGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	1751	0.13061491203074485	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGATC	90	0.0	45.000004	16
CGGGTAC	25	3.8911538E-5	45.000004	6
CCTTATG	25	3.8911538E-5	45.000004	27
TCGTTAG	25	3.8911538E-5	45.000004	1
ATTAGAC	25	3.8911538E-5	45.000004	38
ACGTTAG	50	2.1827873E-11	45.000004	1
CCGGATA	50	2.1827873E-11	45.000004	20
CCGTGTA	25	3.8911538E-5	45.000004	31
CACGCAT	25	3.8911538E-5	45.000004	33
GTTAGCG	115	0.0	45.000004	1
TTCCGTA	25	3.8911538E-5	45.000004	28
TGACGTG	25	3.8911538E-5	45.000004	29
TCTAGTT	25	3.8911538E-5	45.000004	28
AGGCGAT	45	3.8562575E-10	45.000004	6
AGGCGAC	25	3.8911538E-5	45.000004	22
CTGACGT	25	3.8911538E-5	45.000004	28
AACGGTC	25	3.8911538E-5	45.000004	26
CACCTAG	25	3.8911538E-5	45.000004	1
CCCGTAT	25	3.8911538E-5	45.000004	42
AGTGCCG	25	3.8911538E-5	45.000004	15