SRR1547643_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547643_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1501924
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7245	0.48238126562995204	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2471	0.16452230605543292	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1633	0.10872720590389394	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAG	40	6.8175723E-9	45.0	1
GTTACGC	20	7.0339796E-4	45.0	37
CGACGGT	180	0.0	41.25	28
CGTTTTT	4615	0.0	40.173347	1
CACGACG	185	0.0	40.135136	26
GACGGTC	185	0.0	40.135136	29
ACGGGAC	495	0.0	40.0	5
GGGCGTA	40	3.4591721E-7	39.375	7
TCACGAC	190	0.0	39.078945	25
TACGGGA	445	0.0	38.426964	4
GGCGATA	510	0.0	38.382355	8
TCGTCCC	805	0.0	38.291927	38
GGGCGAT	2190	0.0	38.116436	7
GCTACGA	390	0.0	38.076923	10
TAGGGAC	1390	0.0	38.03957	5
CTACGGG	255	0.0	37.941177	3
TATGGGA	1830	0.0	37.745903	4
AACCCGC	60	1.5643309E-10	37.499996	21
CGTGATA	30	1.14008886E-4	37.499996	43
CGCGACG	30	1.14008886E-4	37.499996	15