SRR1547642_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547642_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1996522
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11609	0.5814611609589075	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	5766	0.2888022270728797	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2073	0.103830561346181	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAACCG	20	7.0345367E-4	45.000004	26
CCGTAGA	20	7.0345367E-4	45.000004	32
TCGCTAA	30	2.166309E-6	45.000004	43
TCCCGTA	20	7.0345367E-4	45.000004	30
GTCGGTC	20	7.0345367E-4	45.000004	25
CGTATCA	25	3.891843E-5	45.0	18
CACGCGT	25	3.891843E-5	45.0	26
ACCTCGT	25	3.891843E-5	45.0	14
ACCCGTA	25	3.891843E-5	45.0	33
TATCGTG	25	3.891843E-5	45.0	1
TCGGTTA	35	1.2125383E-7	45.0	38
AGTCGAT	25	3.891843E-5	45.0	21
CGTTTTT	8790	0.0	43.59215	1
CGACGGT	180	0.0	42.500004	28
TACGGGA	660	0.0	42.272728	4
TATAGCG	70	0.0	41.785713	1
TAGCGCG	60	3.6379788E-12	41.250004	1
TCGTTGA	285	0.0	41.052628	24
AATACGG	255	0.0	40.588234	2
CTAACGG	145	0.0	40.34483	2