SRR1547640_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547640_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1827560
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12470	0.6823305390794283	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4493	0.2458469215784981	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2567	0.1404605047166714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGTCA	30	2.1662072E-6	45.000004	30
TCCGCGT	20	7.0343807E-4	45.0	41
GTCGAAC	20	7.0343807E-4	45.0	36
TAGGTCG	20	7.0343807E-4	45.0	1
CGTTCGA	20	7.0343807E-4	45.0	14
GTGTCGA	50	2.1827873E-11	45.0	36
CGTAAGA	20	7.0343807E-4	45.0	41
ACGTATC	25	3.8917133E-5	45.0	27
CCGCGTA	20	7.0343807E-4	45.0	34
CGCCGAC	20	7.0343807E-4	45.0	13
ATACCCG	20	7.0343807E-4	45.0	18
TCGCAAG	90	0.0	42.5	1
CGTTTTT	5645	0.0	42.44907	1
ATCGTAG	150	0.0	42.000004	1
CGACGGT	250	0.0	41.399998	28
CGACAGG	185	0.0	41.351353	2
TAGGGCG	345	0.0	41.086956	5
CGGGATA	530	0.0	40.75472	6
CGCCGGT	50	1.0822987E-9	40.5	28
GACCGAT	980	0.0	40.408165	9