##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547636_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2389964 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.261785114754865 31.0 31.0 33.0 30.0 34.0 2 31.66195432232452 31.0 31.0 34.0 30.0 34.0 3 31.728464529172825 31.0 31.0 34.0 30.0 34.0 4 35.53966084844792 37.0 35.0 37.0 33.0 37.0 5 35.45568761705197 37.0 35.0 37.0 33.0 37.0 6 35.51630610335553 37.0 35.0 37.0 33.0 37.0 7 35.90195417169463 37.0 35.0 37.0 35.0 37.0 8 35.94126647932772 37.0 35.0 37.0 35.0 37.0 9 37.76622995158086 39.0 38.0 39.0 35.0 39.0 10 37.06800646369569 39.0 37.0 39.0 33.0 39.0 11 36.74736481386331 39.0 35.0 39.0 32.0 39.0 12 36.21804930952935 38.0 35.0 39.0 32.0 39.0 13 36.03368921038141 38.0 35.0 39.0 32.0 39.0 14 37.078081092434864 39.0 35.0 41.0 32.0 41.0 15 37.302846402707324 39.0 35.0 41.0 32.0 41.0 16 37.3785433588121 39.0 35.0 41.0 32.0 41.0 17 37.27647613102122 39.0 35.0 41.0 32.0 41.0 18 37.168618857857275 39.0 35.0 41.0 32.0 41.0 19 37.0939683610297 38.0 35.0 41.0 32.0 41.0 20 36.9186945912156 38.0 35.0 41.0 32.0 41.0 21 36.74629492327081 38.0 35.0 41.0 31.0 41.0 22 36.676358723395 38.0 35.0 40.0 31.0 41.0 23 36.61123891405896 38.0 35.0 40.0 31.0 41.0 24 36.521403669678705 38.0 35.0 40.0 31.0 41.0 25 36.417177831967344 38.0 35.0 40.0 31.0 41.0 26 36.30448575794447 38.0 35.0 40.0 31.0 41.0 27 36.23022104098639 38.0 35.0 40.0 30.0 41.0 28 36.22974697526825 38.0 35.0 40.0 30.0 41.0 29 36.23067795163442 38.0 35.0 40.0 30.0 41.0 30 36.21304379480193 38.0 35.0 40.0 30.0 41.0 31 36.08408453014355 38.0 35.0 40.0 30.0 41.0 32 35.90477262419016 38.0 35.0 40.0 30.0 41.0 33 35.71989452560792 38.0 35.0 40.0 29.0 41.0 34 35.61002843557476 38.0 35.0 40.0 29.0 41.0 35 35.37533243178558 38.0 34.0 40.0 27.0 41.0 36 35.27728576664753 38.0 34.0 40.0 26.0 41.0 37 35.236409837135625 38.0 34.0 40.0 27.0 41.0 38 35.1621551621698 38.0 34.0 40.0 26.0 41.0 39 35.11994448451943 38.0 34.0 40.0 26.0 41.0 40 35.069741636275694 38.0 34.0 40.0 25.0 41.0 41 35.0183069703142 38.0 34.0 40.0 25.0 41.0 42 34.98586882480238 38.0 34.0 40.0 25.0 41.0 43 34.92991609915463 37.0 34.0 40.0 25.0 41.0 44 34.80243719152255 37.0 34.0 40.0 24.0 41.0 45 34.72044892726418 37.0 34.0 40.0 24.0 41.0 46 34.6850107365634 37.0 34.0 40.0 24.0 41.0 47 34.632409525833864 37.0 34.0 40.0 24.0 41.0 48 34.497476112610904 37.0 34.0 40.0 23.0 41.0 49 34.441615020142564 37.0 34.0 40.0 24.0 41.0 50 34.34633701595505 36.0 33.0 40.0 24.0 41.0 51 33.93699695895001 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 2.0 12 4.0 13 4.0 14 16.0 15 45.0 16 116.0 17 364.0 18 867.0 19 1758.0 20 3244.0 21 5390.0 22 8373.0 23 13035.0 24 19315.0 25 28650.0 26 38930.0 27 44337.0 28 47295.0 29 51976.0 30 61025.0 31 73414.0 32 90999.0 33 117514.0 34 191928.0 35 292934.0 36 179571.0 37 216352.0 38 324146.0 39 578203.0 40 154.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.803476537721906 24.220239300675658 29.299604512871326 15.67667964873111 2 31.625497287825254 25.965621239483106 29.679903128247958 12.72897834444368 3 28.0120118964135 25.327661839257832 33.382887775715446 13.277438488613216 4 24.614136447243556 27.881173105536316 33.31677799330869 14.187912453911439 5 22.55904273035075 32.014373438260996 31.820270096118602 13.606313735269653 6 20.646419778707966 41.05459329094497 27.90426968774425 10.394717242602818 7 87.28570806924289 3.420930189743444 7.919784565792623 1.3735771752210495 8 87.98145076662243 2.709245829644296 7.538481751189558 1.7708216525437204 9 83.43251195415495 4.949823511985954 9.144112630985237 2.473551902873851 10 43.463541710251704 30.001539772147197 16.005471212118678 10.529447305482426 11 33.457365885009146 23.643619736531598 27.612089554487014 15.286924823972244 12 32.36944154807353 22.527535979621447 28.683946703799723 16.4190757685053 13 21.185130822054223 33.26987352110743 29.25872523602866 16.286270420809686 14 16.646526893292116 35.41915275711266 30.05237735798531 17.881942991609915 15 15.473831404991875 27.64062554917145 41.496440950574986 15.389102095261686 16 17.43796140862373 24.669911345944957 40.505882096968826 17.386245148462486 17 17.775121298898224 26.008299706606458 29.599692715036714 26.6168862794586 18 20.380432508606823 27.1936732101404 33.788082163580704 18.637812117672066 19 24.72397073763454 28.97646157013244 28.004856976925176 18.294710715307847 20 26.367342771690282 26.84613659452611 29.31960481413109 17.466915819652513 21 21.393125586828923 29.60078059753201 30.523179428644116 18.48291438699495 22 21.337225163224215 26.20591774604136 29.821369694271542 22.635487396462874 23 18.388728867882527 31.132435467647213 28.762274243461405 21.71656142100885 24 19.087442321306934 26.93107511242847 36.56716168109645 17.414320885168145 25 17.628340845301434 29.424962049637564 33.194935153834955 19.751761951226044 26 16.976071606099506 34.60562585879955 29.32583921766186 19.09246331743909 27 17.77227606775667 33.51657179773419 30.69284725627666 18.018304878232474 28 16.479578771897817 30.359704162907892 36.28113226810111 16.879584797093177 29 16.662133822936244 26.99902592675036 35.64480469161879 20.69403555869461 30 18.76865090854925 31.29607809992117 32.29952417693321 17.63574681459637 31 24.412501610902925 29.337764083475736 28.451349057977442 17.798385247643896 32 24.701250730136522 29.167719681133274 28.91030994609124 17.22071964263897 33 22.893650280924735 30.52430915277385 27.963935858448075 18.618104707853337 34 18.76936221633464 29.396384213318694 29.74262373826551 22.091629832081153 35 19.10330030075767 29.18073242944245 31.471352706567966 20.244614563231913 36 24.23191311668293 28.849388526354367 28.650766287693035 18.267932069269662 37 18.898778391641045 32.9171067011888 30.29736012760025 17.886754779569902 38 18.248768600698586 33.11903442897048 28.109126329936352 20.523070640394582 39 18.709988937071856 32.026549353881485 29.73412988647528 19.529331822571386 40 21.825893611786622 29.586805491630834 27.935190655591462 20.652110240991078 41 17.21812546130402 27.900754990451738 30.130746739281427 24.750372808962812 42 20.289385112077003 27.95134152648324 27.56878346284714 24.190489898592617 43 20.415161065187593 29.040646637355206 27.861716745524202 22.682475551933 44 18.01985301870656 32.27630206982197 29.27550373143696 20.42834118003451 45 17.429049140489145 35.217434237503156 26.986933694398747 20.36658292760895 46 20.615917227205095 33.3476989611559 26.689104940492825 19.347278871146177 47 19.682472204602245 29.650446617605958 28.702357022950974 21.964724154840827 48 20.569975112595838 27.360956064610175 32.011026107506225 20.058042715287762 49 19.67945960692295 27.76799148439056 31.026074032914302 21.526474875772188 50 17.9938275220882 31.87031269090246 29.612538096808155 20.52332169020119 51 17.522230460375134 31.72641931008166 28.08523475667416 22.66611547286905 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1396.0 1 2026.0 2 2656.0 3 18903.0 4 35150.0 5 24296.5 6 13443.0 7 13318.5 8 13194.0 9 14512.5 10 15831.0 11 16916.0 12 18001.0 13 18166.5 14 18332.0 15 17200.5 16 16069.0 17 15337.0 18 14605.0 19 14516.0 20 14427.0 21 13885.0 22 13343.0 23 14478.5 24 15614.0 25 18249.0 26 24629.0 27 28374.0 28 33691.0 29 39008.0 30 46510.0 31 54012.0 32 63600.0 33 73188.0 34 81492.0 35 89796.0 36 92821.0 37 95846.0 38 108137.5 39 120429.0 40 147158.0 41 173887.0 42 193333.0 43 212779.0 44 219878.5 45 226978.0 46 225482.5 47 223987.0 48 214830.0 49 205673.0 50 188389.5 51 171106.0 52 152030.5 53 132955.0 54 116650.5 55 100346.0 56 86926.5 57 73507.0 58 64765.5 59 56024.0 60 47316.0 61 38608.0 62 32146.0 63 25684.0 64 20651.0 65 15618.0 66 11850.5 67 8083.0 68 6509.5 69 4936.0 70 3812.0 71 2688.0 72 2159.0 73 1630.0 74 1242.5 75 725.5 76 596.0 77 428.5 78 261.0 79 175.0 80 89.0 81 61.5 82 34.0 83 29.0 84 24.0 85 15.5 86 7.0 87 5.0 88 3.0 89 2.5 90 2.0 91 2.5 92 3.0 93 2.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2389964.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.589696482869016 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8289156773846 16.587129705826705 2 8.462319378945454 3.65397813865066 3 3.072915567696983 1.9902994327218297 4 1.7037006776605388 1.4712952211339718 5 1.062815302104691 1.1472929894894512 6 0.7347722808955427 0.9518106317136087 7 0.5251872120132147 0.793704275283464 8 0.44411528309450676 0.767065133233108 9 0.3727278163041326 0.7242372382255903 >10 4.407124032136281 22.69326913756519 >50 1.6226030024305658 25.174773761898233 >100 0.7574928693924105 22.064996205130257 >500 0.004130699954216273 0.6265146553364007 >1k 9.834999890991126E-4 0.33119960665414416 >5k 0.0 0.0 >10k+ 1.9669999781982253E-4 1.022433867137476 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24076 1.0073791906488967 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3103 0.1298345916507529 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.368326886932189E-5 0.0 0.0 0.04874550411638 0.0 2 8.368326886932189E-5 0.0 0.0 0.16075555949796733 0.0 3 8.368326886932189E-5 0.0 0.0 0.28180340791744146 0.0 4 8.368326886932189E-5 0.0 0.0 0.4798398636966917 0.0 5 8.368326886932189E-5 0.0 0.0 0.8629000269460125 0.0 6 8.368326886932189E-5 0.0 0.0 1.4491013253756124 0.0 7 8.368326886932189E-5 0.0 0.0 1.7636248914209587 0.0 8 8.368326886932189E-5 0.0 0.0 2.477694224682882 0.0 9 8.368326886932189E-5 0.0 0.0 2.781171599237478 0.0 10 8.368326886932189E-5 0.0 0.0 3.2349022830469414 0.0 11 8.368326886932189E-5 0.0 0.0 3.709051684460519 0.0 12 8.368326886932189E-5 0.0 0.0 4.095626545002352 0.0 13 8.368326886932189E-5 0.0 0.0 4.294918249814642 0.0 14 8.368326886932189E-5 0.0 0.0 4.388225094603936 0.0 15 8.368326886932189E-5 0.0 0.0 4.500904616136477 0.0 16 8.368326886932189E-5 0.0 0.0 4.707016507361617 0.0 17 8.368326886932189E-5 0.0 0.0 4.954760824849244 0.0 18 8.368326886932189E-5 0.0 0.0 5.259702656609053 0.0 19 8.368326886932189E-5 0.0 0.0 5.453345740772664 0.0 20 8.368326886932189E-5 0.0 0.0 5.636779466134218 0.0 21 8.368326886932189E-5 0.0 0.0 5.8827245933411545 0.0 22 8.368326886932189E-5 0.0 0.0 6.158921222244352 0.0 23 8.368326886932189E-5 0.0 0.0 6.468423792157539 0.0 24 8.368326886932189E-5 0.0 0.0 6.689431305241418 0.0 25 8.368326886932189E-5 0.0 0.0 6.897844486360464 0.0 26 8.368326886932189E-5 0.0 0.0 7.0933286024391995 0.0 27 8.368326886932189E-5 0.0 0.0 7.290904800239669 0.0 28 8.368326886932189E-5 0.0 0.0 7.506347375943738 0.0 29 8.368326886932189E-5 0.0 0.0 7.737731614367413 0.0 30 8.368326886932189E-5 0.0 0.0 8.028572815322741 0.0 31 8.368326886932189E-5 0.0 0.0 8.27443425926081 0.0 32 8.368326886932189E-5 0.0 0.0 8.504856140092487 0.0 33 8.368326886932189E-5 0.0 0.0 8.745863954436134 0.0 34 8.368326886932189E-5 0.0 0.0 8.987373868392996 0.0 35 8.368326886932189E-5 0.0 0.0 9.269972267364697 0.0 36 8.368326886932189E-5 0.0 0.0 9.530394600086026 0.0 37 8.368326886932189E-5 0.0 0.0 9.796758444897078 0.0 38 8.368326886932189E-5 0.0 0.0 10.05262003946503 0.0 39 8.368326886932189E-5 0.0 0.0 10.333210039983866 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGTTA 20 7.034816E-4 45.000004 42 ACACGTC 25 3.892074E-5 45.0 15 CTATACG 50 2.1827873E-11 45.0 1 GTTAGCG 125 0.0 44.999996 1 CATACCG 30 2.1664891E-6 44.999996 21 CGTTTTT 12105 0.0 43.289963 1 TTTAGCG 100 0.0 42.75 1 CGTAAGG 495 0.0 41.81818 2 TCGCGAG 120 0.0 41.249996 1 GCGTAAG 255 0.0 40.588234 1 TGTAGCG 190 0.0 40.26316 1 TATAGCG 185 0.0 40.135136 1 CGGGTAC 225 0.0 40.0 6 TAGTACG 90 0.0 40.0 1 CATACGA 815 0.0 39.7546 18 CTTCGCG 40 3.460318E-7 39.375004 1 CGATCTA 80 0.0 39.375004 10 ACGTAGG 390 0.0 39.23077 2 CGAGGGA 1355 0.0 39.022137 4 AGGGATC 2450 0.0 38.84694 6 >>END_MODULE