SRR1547635_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547635_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1517480
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7630	0.5028072857632391	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCG	3828	0.2522603263304953	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGCCGTCTTC	3424	0.2256372406885099	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGATCTGTCGTATGC	2803	0.18471413132298284	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2019	0.1330495294830904	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGT	20	7.0340006E-4	45.000004	39
GCGATCG	20	7.0340006E-4	45.000004	9
GCGTATT	20	7.0340006E-4	45.000004	16
CCGCAAT	20	7.0340006E-4	45.000004	33
CGCATCG	25	3.8913982E-5	45.0	21
TCCGTAA	25	3.8913982E-5	45.0	28
TTACGCG	25	3.8913982E-5	45.0	1
TAAGTCG	30	2.1659635E-6	44.999996	1
TATAGCG	60	0.0	44.999996	1
TACCGAT	30	2.1659635E-6	44.999996	12
TTAATCG	170	0.0	42.35294	20
GTTAGCG	75	0.0	42.0	1
CGTTTTT	4710	0.0	41.990448	1
GGGCGAT	2045	0.0	41.259167	7
ACCCGCT	105	0.0	40.714287	34
CGGTCTA	190	0.0	40.263157	31
CGCACTC	45	1.9290383E-8	40.0	32
TAATCGT	180	0.0	40.0	21
TACGGGA	620	0.0	39.55645	4
AATGCGG	200	0.0	39.375	2