SRR1547631_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547631_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1617043
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8345	0.5160654354893469	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4055	0.2507663679939247	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3705	0.22912192192786462	No Hit
GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC	1739	0.1075419763110814	RNA PCR Primer, Index 35 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	70	0.0	45.000004	9
ACAACGC	25	3.891512E-5	45.0	40
CGTATCG	20	7.034139E-4	45.0	37
CCTAGCG	20	7.034139E-4	45.0	1
GCGCGAA	20	7.034139E-4	45.0	18
CGGTTCA	20	7.034139E-4	45.0	41
CACGCAT	25	3.891512E-5	45.0	43
CGCGATT	20	7.034139E-4	45.0	43
CGCGATA	20	7.034139E-4	45.0	11
CCCACGT	20	7.034139E-4	45.0	29
AACGGTC	20	7.034139E-4	45.0	25
TACGCAA	20	7.034139E-4	45.0	1
CGAATTC	20	7.034139E-4	45.0	23
GCTAGCG	40	6.8175723E-9	45.0	1
ACGTACG	20	7.034139E-4	45.0	38
ACCAACG	20	7.034139E-4	45.0	31
CCGCGAT	20	7.034139E-4	45.0	10
GGTCTCG	20	7.034139E-4	45.0	10
CGCGTCA	20	7.034139E-4	45.0	39
TTCGCGA	25	3.891512E-5	45.0	1