##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547630_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2013658 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.376512794128892 31.0 31.0 33.0 30.0 34.0 2 31.785430793113825 31.0 31.0 34.0 30.0 34.0 3 31.899513720800652 31.0 31.0 34.0 30.0 34.0 4 35.66834834912383 37.0 35.0 37.0 33.0 37.0 5 35.58068996820711 37.0 35.0 37.0 33.0 37.0 6 35.631366895470826 37.0 35.0 37.0 33.0 37.0 7 35.951204226338334 37.0 35.0 37.0 35.0 37.0 8 35.9863522008206 37.0 35.0 37.0 35.0 37.0 9 37.81210215438769 39.0 38.0 39.0 35.0 39.0 10 37.20804724536143 39.0 37.0 39.0 33.0 39.0 11 36.910585610863414 39.0 37.0 39.0 33.0 39.0 12 36.22612330395727 38.0 35.0 39.0 32.0 39.0 13 35.980391407081044 38.0 35.0 39.0 32.0 39.0 14 36.884425756508804 39.0 35.0 41.0 31.0 41.0 15 37.15139263966373 39.0 35.0 41.0 32.0 41.0 16 37.28289659912458 39.0 35.0 41.0 32.0 41.0 17 37.22296189323112 39.0 35.0 41.0 32.0 41.0 18 37.116322136132354 38.0 35.0 41.0 32.0 41.0 19 37.07450123109287 38.0 35.0 41.0 32.0 41.0 20 36.91401419704836 38.0 35.0 41.0 32.0 41.0 21 36.73862939982857 38.0 35.0 41.0 31.0 41.0 22 36.70813812474611 38.0 35.0 41.0 31.0 41.0 23 36.66782839985738 38.0 35.0 40.0 31.0 41.0 24 36.57651597242432 38.0 35.0 40.0 31.0 41.0 25 36.45994503535357 38.0 35.0 40.0 31.0 41.0 26 36.37115835956255 38.0 35.0 40.0 31.0 41.0 27 36.30860404299042 38.0 35.0 40.0 31.0 41.0 28 36.33410142139331 38.0 35.0 40.0 31.0 41.0 29 36.35510449142804 38.0 35.0 40.0 31.0 41.0 30 36.3793072110557 38.0 35.0 40.0 31.0 41.0 31 36.26133037487001 38.0 35.0 40.0 31.0 41.0 32 36.12888285895619 38.0 35.0 40.0 30.0 41.0 33 35.98956724528197 38.0 35.0 40.0 30.0 41.0 34 35.87382564467253 38.0 35.0 40.0 30.0 41.0 35 35.71790939672973 38.0 35.0 40.0 29.0 41.0 36 35.58660855021061 38.0 35.0 40.0 29.0 41.0 37 35.53944165295199 38.0 34.0 40.0 29.0 41.0 38 35.447691216681285 38.0 34.0 40.0 28.0 41.0 39 35.39853689156749 38.0 34.0 40.0 28.0 41.0 40 35.311026996639946 38.0 34.0 40.0 27.0 41.0 41 35.243910832921976 37.0 34.0 40.0 27.0 41.0 42 35.208788185481346 37.0 34.0 40.0 27.0 41.0 43 35.159068719713076 37.0 34.0 40.0 27.0 41.0 44 35.038543287887016 37.0 34.0 40.0 27.0 41.0 45 34.956350581876364 37.0 34.0 40.0 27.0 41.0 46 34.94782679084532 37.0 34.0 40.0 27.0 41.0 47 34.9003425606533 37.0 34.0 40.0 27.0 41.0 48 34.78225051125862 36.0 34.0 40.0 26.0 41.0 49 34.74142083710342 36.0 34.0 40.0 26.0 41.0 50 34.64713273058285 36.0 34.0 40.0 26.0 41.0 51 34.23044975859853 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 4.0 11 6.0 12 1.0 13 2.0 14 12.0 15 35.0 16 123.0 17 249.0 18 650.0 19 1331.0 20 2312.0 21 3927.0 22 6225.0 23 9477.0 24 14156.0 25 21000.0 26 27742.0 27 32269.0 28 35545.0 29 40401.0 30 48047.0 31 59802.0 32 75768.0 33 100935.0 34 174263.0 35 266684.0 36 143805.0 37 179565.0 38 273199.0 39 495948.0 40 175.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.12630943288284 23.773500763287508 30.473546153318985 13.626643650510662 2 31.18692449263976 26.031133390079148 29.243595486423217 13.538346630857873 3 28.878339817387065 25.107540605207042 32.38782355295686 13.626296024449038 4 25.689168667171884 28.16272673909869 31.548554918461825 14.599549675267598 5 22.818075363343727 32.03543004820084 30.856878377559642 14.289616210895792 6 21.98670280653418 40.18115290679947 27.779295193126142 10.052849093540214 7 87.76217212654781 3.5913248426495468 6.874652994699199 1.7718500361034495 8 88.54626753897634 2.69723061214963 6.657486027915366 2.099015820958673 9 83.49978000236385 5.255261817051356 8.550856202989783 2.694101977595004 10 45.25480493708465 29.140747833048113 14.918869043303282 10.685578186563955 11 37.89521358641835 23.029283026213985 24.835448720686433 14.240054666681235 12 36.024637748813355 21.85217152068524 26.65715826620012 15.466032464301286 13 23.59124538526403 33.8378711777273 27.230343980954064 15.340539456054604 14 16.784131168252006 36.850497949502845 30.18809549585878 16.177275386386366 15 15.461414003768267 27.09039966071696 42.35664646131568 15.091539874199094 16 18.9416474892956 24.08303694073174 40.22008702570148 16.755228544271173 17 19.909239801396264 24.23648901650628 28.798783110140846 27.055488071956606 18 22.051708880058083 25.79762799839893 33.57084470153323 18.57981842000975 19 26.476740340216658 27.38588181309835 27.727846536005618 18.40953131067937 20 28.015631254165307 25.992397914640918 28.428809658839782 17.563161172353993 21 22.70852349306585 27.57593394707542 31.09296613426908 18.62257642558965 22 21.79382000319816 24.971867119441335 30.50359097721659 22.730721900143916 23 19.455389147511642 28.881766417137367 29.13017006860152 22.532674366749468 24 19.925876191488324 26.39385635495203 35.73089372674009 17.949373726819548 25 18.56213915173282 27.58303545090576 33.18920094673475 20.66562445062667 26 17.472182465940094 33.452254553653106 28.604311159094543 20.471251821312258 27 17.068091999733817 33.495260863562734 31.44575692595267 17.99089021075078 28 16.305052794466587 29.41005870907572 35.89959168836019 18.3852968080975 29 16.271482049086785 27.082702226495265 36.07136862366897 20.574447100748987 30 19.01206659720767 29.926929001846393 33.073640111677356 17.987364289268584 31 25.12308445624828 27.762509820436243 29.015701772594948 18.09870395072053 32 26.065101422386523 27.56634939994776 28.939770308562824 17.428778869102896 33 24.519456630669158 28.85326108008411 27.753769508029663 18.87351278121707 34 18.88632528463125 29.01654600731604 29.77084490017669 22.326283807876017 35 19.098327521356655 28.55902044935138 31.279144720702323 21.063507308589642 36 26.337193306907132 26.45335007235588 28.9996116520283 18.209844968708687 37 20.11563036026972 30.991558646006425 30.779159122353448 18.11365187137041 38 20.238441681755294 30.947410136180025 27.67197806181586 21.14217012024882 39 19.662921906301865 30.759294775974865 29.62633178027252 19.951451537450748 40 22.357371509958494 28.650893051352316 28.13799562785736 20.85373981083183 41 18.72949626997236 26.202364055862514 30.324315251149898 24.74382442301523 42 21.90188204749764 26.24090088783696 28.248938002381735 23.608279062283664 43 21.314195359887332 26.641564754292936 29.480726121317524 22.563513764502215 44 19.258881100961535 30.262189507850884 29.54384508193546 20.935084309252115 45 18.19445010026529 34.026433485725974 26.554856882350432 21.224259531658305 46 21.582513018596007 31.38919319963966 27.550954531504356 19.477339250259977 47 19.80852756525686 29.450830280017758 29.536991882434855 21.203650272290528 48 21.371901286117108 27.094769816920248 31.66342050139597 19.869908395566675 49 21.209013645812743 25.994384349278775 31.03401868639064 21.76258331851784 50 18.85613147813581 30.663449304698215 30.121251970294853 20.359167246871117 51 18.2103912382341 32.560643366450506 26.926270498763945 22.30269489655145 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1172.0 1 2029.5 2 2887.0 3 10489.5 4 18092.0 5 13092.5 6 8093.0 7 8177.0 8 8261.0 9 8906.5 10 9552.0 11 10004.5 12 10457.0 13 10367.5 14 10278.0 15 9806.5 16 9335.0 17 9395.5 18 9456.0 19 9198.0 20 8940.0 21 10130.0 22 11320.0 23 12844.5 24 14369.0 25 15126.0 26 20943.0 27 26003.0 28 28963.0 29 31923.0 30 39810.5 31 47698.0 32 51445.0 33 55192.0 34 62132.0 35 69072.0 36 76558.0 37 84044.0 38 93623.5 39 103203.0 40 123661.5 41 144120.0 42 165366.5 43 186613.0 44 189338.0 45 192063.0 46 192336.5 47 192610.0 48 179765.5 49 166921.0 50 157147.0 51 147373.0 52 129516.0 53 111659.0 54 99920.0 55 88181.0 56 77133.0 57 66085.0 58 58522.0 59 50959.0 60 43323.5 61 35688.0 62 29984.5 63 24281.0 64 21073.5 65 17866.0 66 14933.0 67 12000.0 68 10351.0 69 8702.0 70 6987.5 71 5273.0 72 4608.5 73 3944.0 74 2888.0 75 1422.0 76 1012.0 77 872.0 78 732.0 79 491.5 80 251.0 81 173.5 82 96.0 83 105.0 84 114.0 85 77.0 86 40.0 87 23.0 88 6.0 89 5.5 90 5.0 91 3.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2013658.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.147026182440698 #Duplication Level Percentage of deduplicated Percentage of total 1 77.85884805975603 15.686242503945765 2 8.309763876935614 3.348340607970434 3 2.986160736115539 1.8048677560648843 4 1.5472079662312277 1.2468655762136547 5 0.9285223554893761 0.9353482103512984 6 0.68274518634982 0.8253171087195106 7 0.5191084591220149 0.7320944202220374 8 0.38455625085357786 0.6198131883654613 9 0.3345632975004557 0.6066409962982839 >10 3.7630978725121764 18.476530494713963 >50 1.5452605547880027 22.588047902502105 >100 1.135914767793639 31.929861025754676 >500 0.0035005077492348546 0.45780683982378545 >1k 5.000725356049793E-4 0.19490038108255126 >5k 0.0 0.0 >10k+ 2.5003626780248963E-4 0.5473229879715481 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10865 0.5395653085081975 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2842 0.14113618101981568 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.966086594645168E-5 0.0 0.0 0.03818920591282134 0.0 2 4.966086594645168E-5 0.0 0.0 0.13795788559924277 0.0 3 4.966086594645168E-5 0.0 0.0 0.22769507036448097 0.0 4 4.966086594645168E-5 0.0 0.0 0.4380088376477038 0.0 5 4.966086594645168E-5 0.0 0.0 0.7689985091808043 0.0 6 4.966086594645168E-5 0.0 0.0 1.2235444151886765 0.0 7 4.966086594645168E-5 0.0 0.0 1.4405623993746703 0.0 8 4.966086594645168E-5 0.0 0.0 2.0164794617556705 0.0 9 4.966086594645168E-5 0.0 0.0 2.242585384409865 0.0 10 4.966086594645168E-5 0.0 0.0 2.642454677010694 0.0 11 4.966086594645168E-5 0.0 0.0 3.131316241387564 0.0 12 4.966086594645168E-5 0.0 0.0 3.4980120755361637 0.0 13 4.966086594645168E-5 0.0 0.0 3.666958341485992 0.0 14 4.966086594645168E-5 0.0 0.0 3.735639319089935 0.0 15 4.966086594645168E-5 0.0 0.0 3.836599859559071 0.0 16 4.966086594645168E-5 0.0 0.0 4.050787174386117 0.0 17 4.966086594645168E-5 0.0 0.0 4.302617425600574 0.0 18 4.966086594645168E-5 0.0 0.0 4.614686307208076 0.0 19 4.966086594645168E-5 0.0 0.0 4.79406135500666 0.0 20 4.966086594645168E-5 0.0 0.0 4.987242123538357 0.0 21 4.966086594645168E-5 0.0 0.0 5.240065592071742 0.0 22 4.966086594645168E-5 0.0 0.0 5.521295075926498 0.0 23 4.966086594645168E-5 0.0 0.0 5.815784010988956 0.0 24 4.966086594645168E-5 0.0 0.0 6.025899134808394 0.0 25 4.966086594645168E-5 0.0 0.0 6.210389251799461 0.0 26 4.966086594645168E-5 0.0 0.0 6.393588186275922 0.0 27 4.966086594645168E-5 0.0 0.0 6.601567892859661 0.0 28 4.966086594645168E-5 0.0 0.0 6.800757626170879 0.0 29 4.966086594645168E-5 0.0 0.0 7.032028278883504 0.0 30 4.966086594645168E-5 0.0 0.0 7.308887606534973 0.0 31 4.966086594645168E-5 0.0 0.0 7.554609571238015 0.0 32 4.966086594645168E-5 0.0 0.0 7.772471790145099 0.0 33 4.966086594645168E-5 0.0 0.0 7.995498739110614 0.0 34 4.966086594645168E-5 0.0 0.0 8.23471513037467 0.0 35 4.966086594645168E-5 0.0 0.0 8.508296840873674 0.0 36 4.966086594645168E-5 0.0 0.0 8.74597374529339 0.0 37 4.966086594645168E-5 0.0 0.0 8.998300605167312 0.0 38 4.966086594645168E-5 0.0 0.0 9.291200392519485 0.0 39 4.966086594645168E-5 0.0 0.0 9.763723531999972 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGGAT 25 3.8918537E-5 45.000004 10 CACCGCA 25 3.8918537E-5 45.000004 28 GCGCTAA 25 3.8918537E-5 45.000004 36 TCGACTC 25 3.8918537E-5 45.000004 14 CGAGGTA 20 7.034551E-4 45.0 13 GCGATAC 35 1.2125383E-7 45.0 9 TACTCGC 40 6.8193913E-9 45.0 45 CTACGCG 60 0.0 44.999996 1 GCGATCG 30 2.1663182E-6 44.999996 9 CGTTTTT 7145 0.0 41.410076 1 CGTAAGG 280 0.0 40.98214 2 CGCATCG 55 6.184564E-11 40.909092 21 CCGCTCG 50 1.0822987E-9 40.500004 19 GGCGATA 635 0.0 40.3937 8 TCGTAAG 90 0.0 40.000004 1 TTAGTCG 45 1.929584E-8 40.000004 15 TGTAGCG 125 0.0 39.6 1 GTTAGCG 115 0.0 39.130432 1 TACGCGG 115 0.0 39.130432 2 CGATGCG 75 0.0 39.0 10 >>END_MODULE