##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547629_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1730960 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32198779867819 31.0 31.0 33.0 30.0 34.0 2 31.731792762397745 31.0 31.0 34.0 30.0 34.0 3 31.88543813837408 31.0 31.0 34.0 30.0 34.0 4 35.64358795119471 37.0 35.0 37.0 33.0 37.0 5 35.53871897675278 37.0 35.0 37.0 33.0 37.0 6 35.58536130239867 37.0 35.0 37.0 33.0 37.0 7 35.90232992096871 37.0 35.0 37.0 35.0 37.0 8 35.91526378425845 37.0 35.0 37.0 35.0 37.0 9 37.73452708323705 39.0 37.0 39.0 35.0 39.0 10 37.150381869020656 39.0 37.0 39.0 33.0 39.0 11 36.861520774599065 39.0 37.0 39.0 32.0 39.0 12 36.19045731848223 38.0 35.0 39.0 32.0 39.0 13 35.95531150344318 38.0 35.0 39.0 31.0 39.0 14 36.92523917363775 39.0 35.0 41.0 31.0 41.0 15 37.16306673753293 39.0 35.0 41.0 32.0 41.0 16 37.26241045431437 39.0 35.0 41.0 32.0 41.0 17 37.19890061006609 39.0 35.0 41.0 32.0 41.0 18 37.11460807875399 38.0 35.0 41.0 32.0 41.0 19 37.08102671350002 38.0 35.0 41.0 32.0 41.0 20 36.93577205712437 38.0 35.0 41.0 32.0 41.0 21 36.74679310902621 38.0 35.0 41.0 31.0 41.0 22 36.69497850903545 38.0 35.0 41.0 31.0 41.0 23 36.62917282895041 38.0 35.0 40.0 31.0 41.0 24 36.55069614549152 38.0 35.0 40.0 31.0 41.0 25 36.45062624208531 38.0 35.0 40.0 31.0 41.0 26 36.3215158062578 38.0 35.0 40.0 31.0 41.0 27 36.25907242223968 38.0 35.0 40.0 30.0 41.0 28 36.298978601469706 38.0 35.0 40.0 31.0 41.0 29 36.335418496094654 38.0 35.0 40.0 31.0 41.0 30 36.36951576004067 38.0 35.0 40.0 31.0 41.0 31 36.27114260294865 38.0 35.0 40.0 30.0 41.0 32 36.165185792854835 38.0 35.0 40.0 30.0 41.0 33 36.05074813976059 38.0 35.0 40.0 30.0 41.0 34 35.96415110690022 38.0 35.0 40.0 30.0 41.0 35 35.82087512131996 38.0 35.0 40.0 29.0 41.0 36 35.713373503720476 38.0 35.0 40.0 29.0 41.0 37 35.683077020843925 38.0 35.0 40.0 29.0 41.0 38 35.61424874058326 38.0 34.0 40.0 29.0 41.0 39 35.562487868003885 38.0 34.0 40.0 29.0 41.0 40 35.46889009566946 38.0 34.0 40.0 28.0 41.0 41 35.41020474187734 38.0 34.0 40.0 28.0 41.0 42 35.36070157600407 38.0 34.0 40.0 27.0 41.0 43 35.32816471784443 38.0 34.0 40.0 27.0 41.0 44 35.19945983731571 37.0 34.0 40.0 27.0 41.0 45 35.10709895087119 37.0 34.0 40.0 27.0 41.0 46 35.108153856819335 37.0 34.0 40.0 27.0 41.0 47 35.04854473817997 37.0 34.0 40.0 27.0 41.0 48 34.928819267920694 37.0 34.0 40.0 27.0 41.0 49 34.89169767065675 37.0 34.0 40.0 26.0 41.0 50 34.788328442020614 36.0 34.0 40.0 26.0 41.0 51 34.34502299302121 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 6.0 12 5.0 13 9.0 14 17.0 15 35.0 16 98.0 17 245.0 18 615.0 19 1192.0 20 2181.0 21 3424.0 22 5381.0 23 8139.0 24 11986.0 25 17060.0 26 22663.0 27 27171.0 28 30978.0 29 35477.0 30 43465.0 31 51985.0 32 64961.0 33 85383.0 34 143968.0 35 221382.0 36 121796.0 37 155624.0 38 238630.0 39 436943.0 40 136.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.92368396727827 23.95924804732634 28.330695105606136 12.786372879789251 2 31.200432130147433 25.529070573554556 29.28323011508065 13.987267181217359 3 29.07224892545177 26.242605259509173 30.991241854231177 13.693903960807877 4 26.532155566853078 28.056627536164903 30.169963488468827 15.241253408513195 5 23.562358460045292 31.887334196053057 29.41477561584323 15.13553172805842 6 22.268567731201184 41.13902112122753 25.99823219485141 10.594178952719878 7 87.90653741276518 3.955550677080926 6.318170263899801 1.8197416462541016 8 88.13658316772197 3.2915838609788786 6.161205342700004 2.410627628599159 9 82.79671396219439 5.94242501270971 8.215152285436982 3.0457087396589175 10 44.47098719785553 30.917814392013682 13.876923787955816 10.734274622174977 11 37.67054120256967 22.70965244719693 24.636155659287333 14.983650690946066 12 35.16337754771918 22.104150298100475 26.85376900679392 15.878703147386423 13 23.52394047233905 33.910951148495634 26.30158986920553 16.26351850995979 14 17.558118038545086 36.754922124139206 28.752253084993303 16.934706752322413 15 16.684209918195684 26.75266903914591 41.13387946573 15.42924157692841 16 19.473240282848824 23.919039145907472 39.680004159541525 16.927716411702175 17 20.508850580024955 23.260733927993716 28.655832601562135 27.57458289041919 18 22.349678790959928 25.53022600175625 32.99082590007857 19.129269307205252 19 27.344248278411982 26.969138512732822 27.443268475296946 18.243344733558256 20 29.013495401395755 25.789619633036004 27.047303230577253 18.14958173499099 21 24.003789804501547 27.429345565466562 29.92137311087489 18.645491519157 22 23.538672181910616 23.948964736331284 28.752773027684057 23.75959005407404 23 20.275569626103433 29.43597772334427 28.265124555160142 22.023328095392152 24 20.850337385034894 25.690137264870362 35.4700859638582 17.98943938623654 25 19.4156421869945 26.997504275084346 33.30614225632019 20.28071128160096 26 18.265644497850904 33.510999676480104 28.271652724499702 19.951703101169294 27 18.114861117530157 33.14305356565143 30.659171789065027 18.082913527753387 28 16.600325830752876 29.128864907334655 36.49679946388132 17.77400979803115 29 17.84605074640662 27.15522022461524 35.727977538475756 19.27075149050238 30 19.85522484632805 29.85331838979526 31.964747885566393 18.326708878310303 31 26.26675370892453 27.732876554050932 27.718780329990295 18.281589407034247 32 26.43556176919166 28.426075703655773 27.991808014050008 17.146554513102554 33 25.85923418218792 28.045188796968155 26.6500670148357 19.445510006008227 34 19.667987706243935 28.767273651615287 29.325980958543234 22.23875768359754 35 19.865392614502937 28.27812312242917 31.196157045801176 20.66032721726672 36 26.853595692563665 25.955019180108145 28.969184729860885 18.2222003974673 37 19.91403614179415 31.25231085640338 29.43395572399131 19.399697277811157 38 19.72321717428479 32.24395711050516 26.981212737440497 21.05161297776956 39 19.854647132227203 30.763911355548366 29.278781716504138 20.102659795720292 40 23.28262929241577 27.55338078291815 27.995967555576094 21.168022369089982 41 18.67553265240098 25.88384480288395 29.242790128021447 26.19783241669363 42 21.685249803577207 26.371493275407865 27.5936474557471 24.349609465267825 43 21.23677034709063 26.738630586495354 28.424227018533067 23.600372047880942 44 19.54724545916717 30.455585339926976 29.718537690067937 20.278631510837915 45 19.174735406941814 33.54670240791237 26.307482553034156 20.97107963211166 46 21.76636086333595 31.42672274344872 27.138582058510885 19.66833433470444 47 20.429645976799 28.81793917825946 28.695752645930583 22.056662199010955 48 21.47854369829459 26.770058233581366 31.279752276193555 20.47164579193049 49 20.988006655266442 25.757209871978553 31.985834450247264 21.26894902250774 50 19.490918334334705 31.16062762859916 29.674746961223832 19.673707075842305 51 18.275407866155195 32.0958312150483 27.57851134630494 22.050249572491566 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 581.0 1 1626.0 2 2671.0 3 7277.5 4 11884.0 5 8892.0 6 5900.0 7 6170.5 8 6441.0 9 6725.0 10 7009.0 11 7039.5 12 7070.0 13 6894.0 14 6718.0 15 6793.0 16 6868.0 17 6615.5 18 6363.0 19 6434.5 20 6506.0 21 7367.5 22 8229.0 23 8866.0 24 9503.0 25 11937.5 26 17214.0 27 20056.0 28 23991.0 29 27926.0 30 31183.0 31 34440.0 32 39868.0 33 45296.0 34 52486.0 35 59676.0 36 63693.5 37 67711.0 38 78381.0 39 89051.0 40 104872.5 41 120694.0 42 140787.5 43 160881.0 44 165866.5 45 170852.0 46 166159.0 47 161466.0 48 156723.0 49 151980.0 50 140243.5 51 128507.0 52 113344.0 53 98181.0 54 87273.0 55 76365.0 56 68644.0 57 60923.0 58 53632.5 59 46342.0 60 41172.0 61 36002.0 62 30817.0 63 25632.0 64 21760.0 65 17888.0 66 14783.0 67 11678.0 68 10036.5 69 8395.0 70 6558.0 71 4721.0 72 3836.0 73 2951.0 74 2205.0 75 1224.0 76 989.0 77 710.5 78 432.0 79 305.5 80 179.0 81 136.5 82 94.0 83 59.0 84 24.0 85 20.0 86 16.0 87 9.0 88 2.0 89 1.0 90 0.0 91 2.5 92 5.0 93 10.0 94 15.0 95 10.0 96 5.0 97 4.0 98 3.0 99 5.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1730960.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.07119966026411 #Duplication Level Percentage of deduplicated Percentage of total 1 78.3733850826535 14.163010898793965 2 7.798794071947632 2.8186712956689965 3 2.5583668045689003 1.386982719886695 4 1.2603277267726969 0.9110253595150479 5 0.7600555958909229 0.6867558213122942 6 0.5423285019298725 0.5880315983895995 7 0.4144104436576144 0.5242225708044768 8 0.3427958799833549 0.4955786231916112 9 0.2844360181434221 0.46260900669962585 >10 4.453907266310901 20.628414129391516 >50 1.986970237630082 25.750082610577625 >100 1.2193579107607935 30.453667353670216 >500 0.003567270483606733 0.426991772004797 >1k 9.728919500745635E-4 0.3210935930296847 >5k 3.2429731669152124E-4 0.3828626470638675 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6533 0.3774206220825438 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2989 0.17267874474280168 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03864907334658224 0.0 2 0.0 0.0 0.0 0.1218976752784582 0.0 3 0.0 0.0 0.0 0.1861394832925082 0.0 4 0.0 0.0 0.0 0.3615912557193696 0.0 5 0.0 0.0 0.0 0.6127235753570273 0.0 6 0.0 0.0 0.0 0.978127744141979 0.0 7 0.0 0.0 0.0 1.1345149512409298 0.0 8 0.0 0.0 0.0 1.5863451495124092 0.0 9 0.0 0.0 0.0 1.7457942413458427 0.0 10 0.0 0.0 0.0 2.0381753477838886 0.0 11 0.0 0.0 0.0 2.3808753524056017 0.0 12 0.0 0.0 0.0 2.6682303461662893 0.0 13 0.0 0.0 0.0 2.7965406479641355 0.0 14 0.0 0.0 0.0 2.849517031011693 0.0 15 0.0 0.0 0.0 2.9288371770578174 0.0 16 0.0 0.0 0.0 3.1040578638443406 0.0 17 0.0 0.0 0.0 3.292219346489809 0.0 18 0.0 0.0 0.0 3.5296020705273374 0.0 19 0.0 0.0 0.0 3.661840828210935 0.0 20 0.0 0.0 0.0 3.803842954198826 0.0 21 0.0 0.0 0.0 3.990040208901419 0.0 22 0.0 0.0 0.0 4.183343347044414 0.0 23 0.0 0.0 0.0 4.392475851550585 0.0 24 0.0 0.0 0.0 4.545858945325137 0.0 25 0.0 0.0 0.0 4.681448444793641 0.0 26 0.0 0.0 0.0 4.820446457457134 0.0 27 5.7771410084577346E-5 0.0 0.0 4.966896982021537 0.0 28 5.7771410084577346E-5 0.0 0.0 5.116178305680085 0.0 29 5.7771410084577346E-5 0.0 0.0 5.281635624162314 0.0 30 5.7771410084577346E-5 0.0 0.0 5.476729676017932 0.0 31 5.7771410084577346E-5 0.0 0.0 5.6514304201136945 0.0 32 5.7771410084577346E-5 0.0 0.0 5.827286592411148 0.0 33 5.7771410084577346E-5 0.0 0.0 5.999156537412765 0.0 34 5.7771410084577346E-5 0.0 0.0 6.183909506863244 0.0 35 5.7771410084577346E-5 0.0 0.0 6.406156121458612 0.0 36 1.7331423025373203E-4 0.0 0.0 6.595935203586449 0.0 37 1.7331423025373203E-4 0.0 0.0 6.792184683643758 0.0 38 1.7331423025373203E-4 0.0 0.0 7.008596385820585 0.0 39 1.7331423025373203E-4 0.0 0.0 7.336506909460646 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTT 20 7.034278E-4 45.0 36 CAACGTT 20 7.034278E-4 45.0 16 CCCGTTA 25 3.8916267E-5 45.0 39 ACTCGCG 20 7.034278E-4 45.0 1 CGTAATC 25 3.8916267E-5 45.0 22 CGACTCG 20 7.034278E-4 45.0 15 TATCGCC 20 7.034278E-4 45.0 37 TATCGAT 20 7.034278E-4 45.0 13 TCGCGGA 25 3.8916267E-5 45.0 3 ATCGCCT 165 0.0 43.636368 14 TTTACGG 220 0.0 42.954544 2 ATTTACG 75 0.0 42.0 1 TAGGACG 70 0.0 41.785717 1 CGTAAGG 270 0.0 41.666664 2 ATTAGCG 110 0.0 40.909092 1 GGGCGAT 2385 0.0 40.471695 7 TTTAGCG 90 0.0 40.0 1 TCACGAC 155 0.0 39.193546 25 TAGGGCG 690 0.0 39.130432 5 CGGGATC 495 0.0 39.090908 6 >>END_MODULE