SRR1547628_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547628_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1390201
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9692	0.6971653739279428	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3773	0.27139960336670743	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1989	0.14307283623015665	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGAT	35	1.2121745E-7	45.000004	4
TAGACGC	25	3.891228E-5	45.000004	36
GCGCGCG	25	3.891228E-5	45.000004	1
TTCGTAA	25	3.891228E-5	45.000004	20
CGCGAGT	25	3.891228E-5	45.000004	27
CCGCTAG	25	3.891228E-5	45.000004	1
ACCAACG	25	3.891228E-5	45.000004	33
TCGAGCG	25	3.891228E-5	45.000004	1
ACCCGCG	25	3.891228E-5	45.000004	24
ACTCCGA	25	3.891228E-5	45.000004	21
CGTCAGG	25	3.891228E-5	45.000004	2
CCCGCGA	25	3.891228E-5	45.000004	25
ATTTCGC	35	1.2121745E-7	45.000004	18
TCGTTAC	40	6.8175723E-9	45.0	43
GTCGATA	20	7.033798E-4	45.0	30
GGTCGAA	20	7.033798E-4	45.0	9
CGCATCG	45	3.8562575E-10	45.0	21
TAGCGCG	45	3.8562575E-10	45.0	1
CCTACGG	45	3.8562575E-10	45.0	2
GCGTTGC	20	7.033798E-4	45.0	35