SRR1547614_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547614_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1873048
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13311	0.7106598442752134	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	10089	0.5386407609415241	No Hit
GAGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCT	2117	0.11302433253178776	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2021	0.10789899671551396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGCG	45	3.8562575E-10	45.000004	1
TAGCGCA	45	3.8562575E-10	45.000004	1
GTGTCAA	45	3.8562575E-10	45.000004	37
GTATCAC	45	3.8562575E-10	45.000004	36
CCGAAAC	45	3.8562575E-10	45.000004	23
TAGTGTC	45	3.8562575E-10	45.000004	27
CGCCCAT	45	3.8562575E-10	45.000004	41
ATCTCGC	50	2.1827873E-11	45.0	38
GTCGCGA	35	1.2124838E-7	45.0	44
GGTACGT	40	6.8193913E-9	45.0	25
GGTACGC	20	7.0344255E-4	45.0	21
GGTACAT	80	0.0	45.0	8
GTCGAGT	25	3.8917504E-5	45.0	13
CGAAACG	35	1.2124838E-7	45.0	31
CAACGCC	20	7.0344255E-4	45.0	31
CAACGAC	35	1.2124838E-7	45.0	15
ACACCGT	35	1.2124838E-7	45.0	27
TTGCTAG	100	0.0	45.0	1
GACGTAT	35	1.2124838E-7	45.0	9
CGGTTCA	20	7.0344255E-4	45.0	37