SRR1547612_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547612_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1191521
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5763	0.4836675140429753	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3324	0.27897116374784836	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGAA	25	3.890893E-5	45.0	11
TTATCCG	35	1.2119744E-7	45.0	1
CGCCTAG	20	7.0333906E-4	45.0	44
CATAGGA	20	7.0333906E-4	45.0	35
TTGACGC	35	1.2119744E-7	45.0	31
ATGCGAA	20	7.0333906E-4	45.0	11
CGACTAA	20	7.0333906E-4	45.0	40
CGTCCAT	25	3.890893E-5	45.0	45
TTCGATC	20	7.0333906E-4	45.0	35
TATCGTG	35	1.2119744E-7	45.0	1
CCCGCTA	20	7.0333906E-4	45.0	33
CTAGACC	30	2.1655687E-6	44.999996	25
GGTTACG	30	2.1655687E-6	44.999996	1
GCGATAT	150	0.0	43.5	9
TACGGGA	375	0.0	43.2	4
CGGGATA	225	0.0	43.0	6
TATAGCG	80	0.0	42.1875	1
CGGTCTA	160	0.0	42.1875	31
TACGGGT	70	0.0	41.785713	4
TTATACG	55	6.184564E-11	40.909092	1