##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547612_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 1191521 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.400693735150284 31.0 31.0 33.0 30.0 34.0 2 31.817074143049094 31.0 31.0 34.0 30.0 34.0 3 31.942534793763603 31.0 31.0 34.0 30.0 34.0 4 35.6949629926791 37.0 35.0 37.0 33.0 37.0 5 35.6032163931647 37.0 35.0 37.0 33.0 37.0 6 35.659285065055506 37.0 35.0 37.0 33.0 37.0 7 35.96009638101217 37.0 35.0 37.0 35.0 37.0 8 35.99681667381439 37.0 35.0 37.0 35.0 37.0 9 37.8561913722041 39.0 38.0 39.0 35.0 39.0 10 37.285383136344215 39.0 37.0 39.0 34.0 39.0 11 36.93817398098733 39.0 37.0 39.0 33.0 39.0 12 35.92406428422159 37.0 35.0 39.0 32.0 39.0 13 35.53829013504588 37.0 35.0 39.0 31.0 39.0 14 36.43222150511825 38.0 35.0 41.0 31.0 41.0 15 36.762796459315446 38.0 35.0 41.0 32.0 41.0 16 36.93697467354751 38.0 35.0 41.0 32.0 41.0 17 36.87375044166238 38.0 35.0 41.0 32.0 41.0 18 36.813464471041634 38.0 35.0 40.0 32.0 41.0 19 36.737823336726755 37.0 35.0 40.0 32.0 41.0 20 36.56314660001796 37.0 35.0 40.0 32.0 41.0 21 36.35801635053012 37.0 35.0 40.0 31.0 41.0 22 36.283148177833205 37.0 35.0 40.0 31.0 41.0 23 36.251538160049215 37.0 35.0 40.0 31.0 41.0 24 36.1721832850617 37.0 35.0 40.0 31.0 41.0 25 36.078513093768386 36.0 35.0 40.0 31.0 41.0 26 35.94408575258011 36.0 35.0 40.0 31.0 41.0 27 35.86838083424463 36.0 35.0 40.0 31.0 41.0 28 35.93222696033054 36.0 35.0 40.0 31.0 41.0 29 36.027301239340304 36.0 35.0 40.0 31.0 41.0 30 36.07024383120398 36.0 35.0 40.0 31.0 41.0 31 35.918000605948194 36.0 35.0 40.0 31.0 41.0 32 35.74055765697793 36.0 35.0 40.0 30.0 41.0 33 35.592081885254224 36.0 34.0 40.0 30.0 41.0 34 35.52959033034248 36.0 35.0 40.0 30.0 41.0 35 35.36869178134502 36.0 34.0 40.0 29.0 41.0 36 35.206933826596426 36.0 34.0 40.0 29.0 41.0 37 35.1399387841255 36.0 34.0 40.0 28.0 41.0 38 35.100973461651115 36.0 34.0 40.0 28.0 41.0 39 35.083277592253935 36.0 34.0 40.0 28.0 41.0 40 34.9678746744707 36.0 34.0 40.0 27.0 41.0 41 34.9369134073172 36.0 34.0 40.0 27.0 41.0 42 34.89276143685256 36.0 34.0 40.0 27.0 41.0 43 34.81853613994214 35.0 34.0 40.0 27.0 41.0 44 34.702943548623985 35.0 34.0 40.0 27.0 41.0 45 34.605058576391016 35.0 34.0 40.0 27.0 41.0 46 34.590361395225095 35.0 34.0 40.0 27.0 41.0 47 34.56849438658656 35.0 34.0 40.0 27.0 41.0 48 34.48554830338701 35.0 34.0 40.0 27.0 41.0 49 34.465516763867356 36.0 34.0 40.0 27.0 41.0 50 34.3540323670334 35.0 34.0 40.0 26.0 41.0 51 33.89933454802727 35.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 2.0 12 2.0 13 2.0 14 8.0 15 22.0 16 71.0 17 150.0 18 370.0 19 772.0 20 1354.0 21 2352.0 22 3777.0 23 5494.0 24 8258.0 25 12320.0 26 16552.0 27 19747.0 28 22042.0 29 25021.0 30 29724.0 31 36978.0 32 47087.0 33 63646.0 34 119821.0 35 209568.0 36 77504.0 37 94688.0 38 142345.0 39 251726.0 40 116.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.80868906213151 24.87408950408763 30.553552979762845 13.763668454018015 2 29.391173130813474 26.438140830081885 30.616917368640586 13.553768670464054 3 28.642634078627232 25.460147156449615 32.03804213270266 13.8591766322205 4 25.505383455264326 27.303757130591904 32.25188645437218 14.938972959771585 5 23.01117647108192 32.68486245731296 30.55951175010764 13.744449321497482 6 22.506443444974952 41.00892892361948 26.49848387061579 9.98614376078978 7 88.94119365080431 3.5533574313839202 6.249910828260685 1.2555380895510864 8 90.02208102081289 2.540534325454608 5.6660352608136995 1.7713493929187987 9 85.52262192609278 4.798152949045799 7.2793513500811144 2.3998737747803016 10 50.88454169083047 28.225016596434305 10.997707971575826 9.892733741159407 11 46.17501495987062 17.866491652266305 21.373689595063787 14.584803792799287 12 42.680825600220224 19.23113398756715 23.57751143286606 14.510528979346565 13 22.069690756604373 40.28254642595472 23.72538964902843 13.922373168412475 14 15.332923213271105 42.09745359083054 27.295532348989234 15.27409084690912 15 13.626281030716203 23.961726230590983 48.13570218233669 14.27629055635612 16 15.690449433958781 19.691637830974024 47.55316943637586 17.064743298691337 17 16.420692543396214 19.528904652121113 28.755347157121026 35.29505564736165 18 21.494711381503137 21.657948118413355 35.78484978443519 21.06249071564832 19 27.85347467648493 24.568429763302536 26.701753473081887 20.876342087130652 20 31.415392594843063 22.605896161293 26.65886711186794 19.319844131995996 21 22.18970542692911 27.21672551302075 30.337442646835434 20.256126413214705 22 23.86697338947446 22.786002093122992 26.168905122108633 27.178119395293916 23 19.24321938094251 28.683590133954834 25.70093183418505 26.37225865091761 24 20.081643546357974 22.880419228867975 39.76723868064432 17.270698544129733 25 16.67238764570662 24.791170277317814 36.80379951339506 21.732642563580498 26 17.116441925908145 33.99067242625182 28.299039630858374 20.593846016981658 27 16.828322790785894 35.76202181917063 29.294489983810607 18.115165406232876 28 14.731590966504157 29.14510109347632 38.84992375291748 17.27338418710203 29 14.805026516528033 24.059080788336924 38.34519072681052 22.79070196832452 30 17.932289905087696 30.861310879120047 33.2344960768631 17.97190313892915 31 28.433405705816345 28.3851480586578 24.82138376075621 18.36006247476964 32 29.24195209316495 25.543989572991162 28.04180538991759 17.172252943926292 33 27.49737520362629 28.127494186002593 24.79352021491858 19.581610395452532 34 19.272845379980712 27.444837312980635 28.147132950237552 25.135184356801098 35 19.189338668810706 26.511576380105762 31.230335008782887 23.06874994230064 36 30.034552475365523 23.6764605911268 27.280509533612918 19.00847739989476 37 19.856972726456355 31.666751991781933 30.57361137571222 17.902663906049497 38 19.521770912975935 32.725986365326335 24.408969711822117 23.343273009875613 39 19.1952974391555 32.346303590117174 28.601258391585212 19.857140579142122 40 24.293235284984487 26.48287357083929 26.250817232763836 22.97307391141239 41 17.258025666354182 23.74024461171897 29.672494232162084 29.329235489764766 42 21.88631169740189 24.257986220973024 26.225219698184087 27.630482383440995 43 21.90821647289473 25.054447214946272 28.024180857911862 25.013155454247133 44 18.1948115056302 29.38748037172656 30.07928521612292 22.33842290652032 45 17.662886344428674 36.641989524313885 23.95904058761868 21.73608354363876 46 22.336912232348404 32.79002216494716 25.597534579751425 19.275531022953015 47 20.024405780510794 28.353843532761907 27.7619949627409 23.8597557239864 48 22.523396566237608 24.05673085073616 31.94496781844382 21.474904764582412 49 21.31729109264545 23.209997977375135 33.04230475165775 22.430406178321658 50 19.778249816830755 31.76142090655557 28.81040283805321 19.64992643856046 51 18.15830354647547 32.87159857023082 25.21617327768457 23.753924605609132 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 558.0 1 1009.0 2 1460.0 3 5513.5 4 9567.0 5 6845.5 6 4124.0 7 4357.5 8 4591.0 9 4944.5 10 5298.0 11 5550.5 12 5803.0 13 5525.0 14 5247.0 15 5053.5 16 4860.0 17 4497.5 18 4135.0 19 3919.5 20 3704.0 21 4031.0 22 4358.0 23 4695.0 24 5032.0 25 5662.0 26 7698.0 27 9104.0 28 9871.0 29 10638.0 30 13074.5 31 15511.0 32 18973.5 33 22436.0 34 26973.5 35 31511.0 36 33624.0 37 35737.0 38 40881.5 39 46026.0 40 69133.0 41 92240.0 42 111826.0 43 131412.0 44 135570.0 45 139728.0 46 132641.0 47 125554.0 48 112234.5 49 98915.0 50 91554.5 51 84194.0 52 75188.5 53 66183.0 54 59789.5 55 53396.0 56 47397.0 57 41398.0 58 37022.0 59 32646.0 60 29621.0 61 26596.0 62 23588.5 63 20581.0 64 17781.0 65 14981.0 66 12725.0 67 10469.0 68 8351.0 69 6233.0 70 5238.5 71 4244.0 72 3573.5 73 2903.0 74 2317.5 75 1374.0 76 1016.0 77 844.0 78 672.0 79 457.0 80 242.0 81 170.5 82 99.0 83 85.5 84 72.0 85 41.5 86 11.0 87 8.5 88 6.0 89 3.5 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1191521.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.09292004250519 #Duplication Level Percentage of deduplicated Percentage of total 1 78.48997120226302 14.201127731010798 2 7.821539640383798 2.830289826454977 3 2.5128768130796253 1.363958377671448 4 1.1504508322483686 0.8326005968281314 5 0.6868338511356532 0.6213414975541645 6 0.4790290252182412 0.5200220310787704 7 0.35387704281173515 0.4481868328329637 8 0.30461280628805115 0.4409068118474265 9 0.2552823844224586 0.4156923392654054 >10 4.795659639028557 23.211114288581935 >50 1.9945409670157153 25.82737805705374 >100 1.151110987768786 28.06597959649594 >500 0.0023415601866736903 0.27080130659622625 >1k 0.0014049361120042141 0.462294095365773 >5k 4.6831203733473803E-4 0.48830661136234416 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5763 0.4836675140429753 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 3324 0.27897116374784836 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04238280315663761 0.0 2 0.0 0.0 0.0 0.17674887811461149 0.0 3 0.0 0.0 0.0 0.27410343586055136 0.0 4 0.0 0.0 0.0 0.5841273464756391 0.0 5 0.0 0.0 0.0 0.9271343098443082 0.0 6 0.0 0.0 0.0 1.384616804907341 0.0 7 0.0 0.0 0.0 1.5709332861107776 0.0 8 0.0 0.0 0.0 2.1123421240582414 0.0 9 0.0 0.0 0.0 2.26592733153675 0.0 10 0.0 0.0 0.0 2.553626834944579 0.0 11 0.0 0.0 0.0 2.9636909462779086 0.0 12 0.0 0.0 0.0 3.3042640457029293 0.0 13 0.0 0.0 0.0 3.4340141718022594 0.0 14 0.0 0.0 0.0 3.4857967253619533 0.0 15 0.0 0.0 0.0 3.571989079504264 0.0 16 0.0 0.0 0.0 3.7651035944813396 0.0 17 0.0 0.0 0.0 3.981213927408749 0.0 18 0.0 0.0 0.0 4.276970359733483 0.0 19 0.0 0.0 0.0 4.430555567211992 0.0 20 0.0 0.0 0.0 4.588756723549144 0.0 21 0.0 0.0 0.0 4.804447424762132 0.0 22 0.0 0.0 0.0 5.028027202206256 0.0 23 8.392634288443091E-5 0.0 0.0 5.27812770400186 0.0 24 8.392634288443091E-5 0.0 0.0 5.45504443480224 0.0 25 8.392634288443091E-5 0.0 0.0 5.5946139430190485 0.0 26 8.392634288443091E-5 0.0 0.0 5.749541971983708 0.0 27 8.392634288443091E-5 0.0 0.0 5.887768658714366 0.0 28 1.6785268576886183E-4 0.0 0.0 6.038500370534804 0.0 29 1.6785268576886183E-4 0.0 0.0 6.1989675381298355 0.0 30 1.6785268576886183E-4 0.0 0.0 6.392753463849987 0.0 31 1.6785268576886183E-4 0.0 0.0 6.58846969545648 0.0 32 1.6785268576886183E-4 0.0 0.0 6.75649023391111 0.0 33 1.6785268576886183E-4 0.0 0.0 6.927112488995158 0.0 34 1.6785268576886183E-4 0.0 0.0 7.108896947682836 0.0 35 1.6785268576886183E-4 0.0 0.0 7.354633279648449 0.0 36 1.6785268576886183E-4 0.0 0.0 7.563777726116451 0.0 37 1.6785268576886183E-4 0.0 0.0 7.769900824240613 0.0 38 1.6785268576886183E-4 0.0 0.0 7.962595707503267 0.0 39 1.6785268576886183E-4 0.0 0.0 8.152353168764964 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCCGAA 25 3.890893E-5 45.0 11 TTATCCG 35 1.2119744E-7 45.0 1 CGCCTAG 20 7.0333906E-4 45.0 44 CATAGGA 20 7.0333906E-4 45.0 35 TTGACGC 35 1.2119744E-7 45.0 31 ATGCGAA 20 7.0333906E-4 45.0 11 CGACTAA 20 7.0333906E-4 45.0 40 CGTCCAT 25 3.890893E-5 45.0 45 TTCGATC 20 7.0333906E-4 45.0 35 TATCGTG 35 1.2119744E-7 45.0 1 CCCGCTA 20 7.0333906E-4 45.0 33 CTAGACC 30 2.1655687E-6 44.999996 25 GGTTACG 30 2.1655687E-6 44.999996 1 GCGATAT 150 0.0 43.5 9 TACGGGA 375 0.0 43.2 4 CGGGATA 225 0.0 43.0 6 TATAGCG 80 0.0 42.1875 1 CGGTCTA 160 0.0 42.1875 31 TACGGGT 70 0.0 41.785713 4 TTATACG 55 6.184564E-11 40.909092 1 >>END_MODULE