SRR1547611_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547611_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2198849
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12990	0.5907636222405449	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8001	0.36387218949550426	No Hit
GAGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	2631	0.11965350963163	No Hit
AAGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	2199	0.10000686722917307	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	30	2.166409E-6	45.000004	39
ATCTCGA	45	3.8562575E-10	45.000004	43
TCCGCGA	30	2.166409E-6	45.000004	17
GGTCGCT	40	6.8193913E-9	45.000004	8
CGGCCTA	20	7.034692E-4	45.000004	44
ACCGCTT	40	6.8193913E-9	45.000004	35
TAGTTCG	20	7.034692E-4	45.000004	31
CCCGTTA	20	7.034692E-4	45.000004	36
CTAACGG	120	0.0	45.000004	2
AGTGCCG	45	3.8562575E-10	45.000004	1
TCGGAAT	20	7.034692E-4	45.000004	41
GTTCGTC	20	7.034692E-4	45.000004	39
ACGGCAT	45	3.8562575E-10	45.000004	43
TTGCGTA	30	2.166409E-6	45.000004	1
CGTACTT	30	2.166409E-6	45.000004	40
CTACCTA	40	6.8193913E-9	45.000004	21
ACGCTAA	30	2.166409E-6	45.000004	36
TATAGTC	20	7.034692E-4	45.000004	24
CATCGGC	20	7.034692E-4	45.000004	33
ATCGGAC	40	6.8193913E-9	45.000004	10