SRR1547608_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547608_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	862114
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4849	0.5624546173707885	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1012	0.11738586776226809	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGATC	20	7.032303E-4	45.000004	33
GTCTACG	20	7.032303E-4	45.000004	1
TACGATA	20	7.032303E-4	45.000004	43
TATTACG	20	7.032303E-4	45.000004	1
GCGTGAT	20	7.032303E-4	45.000004	16
ATCGATC	20	7.032303E-4	45.000004	11
AGCGTCG	25	3.8899918E-5	45.0	17
CGGGCTA	25	3.8899918E-5	45.0	6
ATACCGG	25	3.8899918E-5	45.0	2
TACTCGC	30	2.1648684E-6	44.999996	45
CGTATGG	85	0.0	42.35294	2
CGTTTTT	2460	0.0	41.615852	1
ATGACGG	65	0.0	41.538464	2
ACGGGAC	320	0.0	41.48438	5
ATATGCG	60	3.6379788E-12	41.249996	1
ACGGGCT	55	6.002665E-11	40.909092	5
GCTACGA	55	6.002665E-11	40.909092	10
CGGGACC	260	0.0	40.67308	6
TATGCGG	155	0.0	40.64516	2
GCGATAT	95	0.0	40.26316	9