##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547605_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 484715 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28551416811941 31.0 31.0 33.0 30.0 34.0 2 31.696671239800708 31.0 31.0 34.0 30.0 34.0 3 31.774710912598124 31.0 31.0 34.0 30.0 34.0 4 35.57729799985559 37.0 35.0 37.0 33.0 37.0 5 35.494098594019164 37.0 35.0 37.0 33.0 37.0 6 35.54163374354002 37.0 35.0 37.0 33.0 37.0 7 35.91712449583776 37.0 35.0 37.0 35.0 37.0 8 35.955388217818715 37.0 35.0 37.0 35.0 37.0 9 37.76144951156866 39.0 38.0 39.0 35.0 39.0 10 37.13392612153533 39.0 37.0 39.0 33.0 39.0 11 36.818002331266825 39.0 37.0 39.0 32.0 39.0 12 36.494110972427094 39.0 35.0 39.0 32.0 39.0 13 36.386422949568306 39.0 35.0 39.0 32.0 39.0 14 37.441354197827586 40.0 36.0 41.0 32.0 41.0 15 37.60525669723446 40.0 36.0 41.0 32.0 41.0 16 37.64654075075044 40.0 36.0 41.0 32.0 41.0 17 37.53648019970498 39.0 36.0 41.0 32.0 41.0 18 37.40424166778416 39.0 36.0 41.0 32.0 41.0 19 37.34387629844341 39.0 36.0 41.0 32.0 41.0 20 37.19333216426147 39.0 35.0 41.0 32.0 41.0 21 37.038606191267036 39.0 35.0 41.0 31.0 41.0 22 36.984066925925546 39.0 35.0 41.0 31.0 41.0 23 36.90514838616507 39.0 35.0 41.0 31.0 41.0 24 36.8231661904418 38.0 35.0 41.0 31.0 41.0 25 36.73491845723776 38.0 35.0 41.0 31.0 41.0 26 36.638707281598464 38.0 35.0 40.0 31.0 41.0 27 36.54676871976316 38.0 35.0 40.0 31.0 41.0 28 36.546112664142846 38.0 35.0 40.0 31.0 41.0 29 36.54451378645183 38.0 35.0 40.0 31.0 41.0 30 36.52414099006633 38.0 35.0 40.0 30.0 41.0 31 36.43881662420185 38.0 35.0 41.0 30.0 41.0 32 36.31527598692015 38.0 35.0 41.0 30.0 41.0 33 36.163529084100965 38.0 35.0 41.0 30.0 41.0 34 36.0019392839091 38.0 35.0 41.0 29.0 41.0 35 35.79822369846198 38.0 35.0 41.0 28.0 41.0 36 35.69500634393406 38.0 35.0 41.0 27.0 41.0 37 35.67511630545785 38.0 35.0 41.0 27.0 41.0 38 35.579569437710816 38.0 35.0 41.0 27.0 41.0 39 35.50481004301497 38.0 35.0 40.0 27.0 41.0 40 35.43685877268086 38.0 35.0 40.0 26.0 41.0 41 35.33485450213012 38.0 34.0 40.0 26.0 41.0 42 35.30344841814262 38.0 34.0 40.0 26.0 41.0 43 35.26728283630587 38.0 34.0 40.0 26.0 41.0 44 35.144682958026884 38.0 34.0 40.0 25.0 41.0 45 35.06353011563496 38.0 34.0 40.0 25.0 41.0 46 35.0427591471277 38.0 34.0 40.0 25.0 41.0 47 34.990716194052176 38.0 34.0 40.0 25.0 41.0 48 34.84473762932858 38.0 34.0 40.0 24.0 41.0 49 34.770405289706325 37.0 34.0 40.0 24.0 41.0 50 34.7079005188616 37.0 34.0 40.0 24.0 41.0 51 34.291371218138494 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 3.0 15 4.0 16 23.0 17 77.0 18 173.0 19 389.0 20 658.0 21 1039.0 22 1582.0 23 2378.0 24 3549.0 25 5390.0 26 7462.0 27 8729.0 28 9295.0 29 10135.0 30 11720.0 31 14119.0 32 17436.0 33 22132.0 34 33014.0 35 46218.0 36 37107.0 37 47438.0 38 72984.0 39 131627.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.653033225709954 23.83792537883086 28.797953436555503 15.711087958903686 2 32.11454153471628 25.478270736412117 29.410065708715432 12.997122020156175 3 27.989437091899365 25.401111993645753 33.43242936570975 13.177021548745138 4 24.908657664813344 28.028841690477908 32.91831282299908 14.144187821709664 5 22.739754288602583 32.254417544330174 31.182241110755804 13.82358705631144 6 21.66716524143053 40.47883808010893 27.78808165623098 10.065915022229557 7 88.34944245587614 2.4816644832530455 7.725364389383452 1.4435286714873687 8 88.65890265413697 2.107011336558596 7.526690942099997 1.7073950672044398 9 83.322777302126 5.246381894515334 9.061200911876051 2.369639891482624 10 38.011615072774724 38.688095066172906 13.985744200200118 9.314545660852254 11 27.65377593018578 24.081573708261555 31.519140113262434 16.745510248290234 12 28.79444622097521 22.970817903304003 30.374756300093868 17.859979575626912 13 23.118739878072684 27.111395356033956 31.745871285188205 18.023993480705155 14 17.647689879619982 30.575080201768053 32.08173875370063 19.69549116491134 15 17.204130262112788 28.17862042643615 37.676985445055344 16.940263866395718 16 21.394427653363316 26.64741136544155 35.70118523255934 16.256975748635796 17 20.97645007891235 26.74808908327574 30.663379511671806 21.612081326140103 18 21.396903334949403 26.924687703083254 33.214569386134116 18.463839575833223 19 23.706095334371742 28.620323282753784 29.670012275254532 18.003569107619942 20 25.504265393066028 27.551241451162024 29.857751462199438 17.086741693572513 21 23.54496972447727 27.40909606676088 31.554212269065328 17.49172193969652 22 22.78493547754866 24.73288427220119 31.80116150727747 20.68101874297267 23 20.09634527505854 28.02842907688023 31.667887315226473 20.20733833283476 24 19.19375303013111 27.273139886324955 35.087009892411004 18.446097191132935 25 20.197435606490412 29.034587334825616 31.48798778663751 19.27998927204646 26 19.729944400317713 31.195032132283917 29.512600187739185 19.56242327965918 27 18.69325273614392 30.8174906904057 31.735968558843858 18.75328801460652 28 17.974892462581103 29.048409890347937 34.406610069834855 18.57008757723611 29 18.91214424971375 26.84773526711573 33.96346306592534 20.276657417245186 30 20.44954251467357 28.205234003486584 32.555212857039706 18.79001062480014 31 22.1889151356983 28.746583043644204 30.132139504657374 18.932362316000123 32 22.956582734184007 27.986136183117914 30.763025695511796 18.294255387186283 33 22.1975800212496 28.603818738846538 30.262731708323447 18.935869531580412 34 19.587180095520047 28.463323808836122 31.58474567529373 20.364750420350102 35 19.863837512765233 28.57844300258915 31.657571975284444 19.900147509361172 36 22.421629204790445 28.951858308490557 29.77605396985858 18.850458516860424 37 20.08231641273738 30.101606098428974 30.93941800852047 18.876659480313172 38 20.220335661161716 29.764088175525828 29.81793425002321 20.197641913289253 39 19.54096737257976 29.998246392209854 29.750471926802348 20.710314308408034 40 22.091950940243237 28.2714584859144 29.70322766986786 19.9333629039745 41 18.946803791918963 27.698750812333024 30.73517427766832 22.619271118079695 42 20.717741353166293 28.011305612576464 29.58418864693686 21.686764387320384 43 20.75652703134832 28.313751379676717 29.564589501047006 21.365132087927957 44 19.923666484428995 29.849499190245815 29.61018330359077 20.616651021734423 45 19.129179002094013 30.932403577359892 28.7608182127642 21.177599207781892 46 20.896196734163375 30.447582600084587 28.44001114056714 20.2162095251849 47 20.041673973365793 28.323241492423385 30.682566043963977 20.952518490246845 48 20.332360252932137 27.668423712903454 31.883684226813696 20.115531807350713 49 20.155142712728097 27.262618239584086 31.294059395727388 21.28817965196043 50 18.895227092208824 29.596773361666134 31.025654250435824 20.48234529568922 51 18.838699029326513 29.648762674973955 30.240244267249828 21.272294028449707 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 231.0 1 431.0 2 631.0 3 3911.0 4 7191.0 5 4978.5 6 2766.0 7 2762.5 8 2759.0 9 2851.0 10 2943.0 11 3078.0 12 3213.0 13 3177.0 14 3141.0 15 2943.5 16 2746.0 17 2756.5 18 2767.0 19 2543.5 20 2320.0 21 2594.5 22 2869.0 23 3297.5 24 3726.0 25 4014.0 26 5392.5 27 6483.0 28 7805.5 29 9128.0 30 10572.5 31 12017.0 32 13837.5 33 15658.0 34 17716.5 35 19775.0 36 20683.0 37 21591.0 38 23525.5 39 25460.0 40 29096.5 41 32733.0 42 35812.0 43 38891.0 44 40551.5 45 42212.0 46 42093.5 47 41975.0 48 40136.0 49 38297.0 50 35085.0 51 31873.0 52 28978.5 53 26084.0 54 23127.0 55 20170.0 56 18112.5 57 16055.0 58 14764.0 59 13473.0 60 11902.0 61 10331.0 62 8803.0 63 7275.0 64 6177.5 65 5080.0 66 4181.5 67 3283.0 68 2715.0 69 2147.0 70 1727.5 71 1308.0 72 1032.5 73 757.0 74 599.0 75 364.5 76 288.0 77 241.0 78 194.0 79 129.0 80 64.0 81 49.0 82 34.0 83 24.0 84 14.0 85 11.0 86 8.0 87 8.0 88 8.0 89 4.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 484715.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.275848407693836 #Duplication Level Percentage of deduplicated Percentage of total 1 67.35440484824387 23.086293701688458 2 8.123160971030112 5.568564680686463 3 4.420260774575955 4.545245646955224 4 3.208319620111113 4.398715077694336 5 2.6139092169742995 4.479697803624239 6 2.1540508473859665 4.429915218447951 7 1.7655849315751913 4.236184502590582 8 1.540279453612804 4.2235508046014365 9 1.2978121395837816 4.0035250942234635 >10 7.502159572421185 39.212703342462966 >50 0.009724908841571263 0.2314556724182047 >100 0.009724908841571248 0.6364510164154944 >500 0.0 0.0 >1k 6.07806802598203E-4 0.9476974381911896 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4549 0.9384896279256884 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0630679884055578E-4 0.0 0.0 0.0391982917797056 0.0 2 2.0630679884055578E-4 0.0 0.0 0.11532550055187069 0.0 3 2.0630679884055578E-4 0.0 0.0 0.23766543226432027 0.0 4 2.0630679884055578E-4 0.0 0.0 0.3767162146828549 0.0 5 2.0630679884055578E-4 0.0 0.0 0.6583249951002135 0.0 6 2.0630679884055578E-4 0.0 0.0 1.2068947732172515 0.0 7 2.0630679884055578E-4 0.0 0.0 1.4930423032091023 0.0 8 2.0630679884055578E-4 0.0 0.0 2.101853666587582 0.0 9 2.0630679884055578E-4 0.0 0.0 2.414614773629865 0.0 10 2.0630679884055578E-4 0.0 0.0 2.7863796251405466 0.0 11 2.0630679884055578E-4 0.0 0.0 3.1222470936529714 0.0 12 2.0630679884055578E-4 0.0 0.0 3.397047749708592 0.0 13 2.0630679884055578E-4 0.0 0.0 3.538986827310894 0.0 14 2.0630679884055578E-4 0.0 0.0 3.6297618188007386 0.0 15 2.0630679884055578E-4 0.0 0.0 3.7122845383369607 0.0 16 2.0630679884055578E-4 0.0 0.0 3.8426704352041923 0.0 17 2.0630679884055578E-4 0.0 0.0 4.014317691839534 0.0 18 2.0630679884055578E-4 0.0 0.0 4.2032947195774835 0.0 19 2.0630679884055578E-4 0.0 0.0 4.348328399162394 0.0 20 2.0630679884055578E-4 0.0 0.0 4.495631453534552 0.0 21 2.0630679884055578E-4 0.0 0.0 4.669135471359459 0.0 22 2.0630679884055578E-4 0.0 0.0 4.879568406176825 0.0 23 2.0630679884055578E-4 0.0 0.0 5.081130148644049 0.0 24 2.0630679884055578E-4 0.0 0.0 5.247000814911855 0.0 25 2.0630679884055578E-4 0.0 0.0 5.389352506111839 0.0 26 2.0630679884055578E-4 0.0 0.0 5.53459249249559 0.0 27 2.0630679884055578E-4 0.0 0.0 5.684990148850355 0.0 28 2.0630679884055578E-4 0.0 0.0 5.834768884808599 0.0 29 2.0630679884055578E-4 0.0 0.0 6.017556708581331 0.0 30 2.0630679884055578E-4 0.0 0.0 6.231703165777828 0.0 31 2.0630679884055578E-4 0.0 0.0 6.427075704279835 0.0 32 2.0630679884055578E-4 0.0 0.0 6.618115800006189 0.0 33 2.0630679884055578E-4 0.0 0.0 6.804823452956892 0.0 34 2.0630679884055578E-4 0.0 0.0 6.997307696275131 0.0 35 2.0630679884055578E-4 0.0 0.0 7.201964040724962 0.0 36 2.0630679884055578E-4 0.0 0.0 7.396305045232766 0.0 37 2.0630679884055578E-4 0.0 0.0 7.599723548889553 0.0 38 2.0630679884055578E-4 0.0 0.0 7.831406083987498 0.0 39 2.0630679884055578E-4 0.0 0.0 8.15530775816717 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAATG 35 1.2099918E-7 45.000004 1 GCGCGAC 30 2.1628948E-6 45.000004 9 GAACGCC 20 7.0292444E-4 45.000004 28 GCGATAT 30 2.1628948E-6 45.000004 9 GCGATAC 60 0.0 45.000004 9 CGATACG 20 7.0292444E-4 45.000004 10 TTAAGCG 25 3.8874554E-5 45.0 1 CGAGGGT 25 3.8874554E-5 45.0 4 TGTTACG 25 3.8874554E-5 45.0 1 CGTTTTT 2580 0.0 42.034885 1 TTAGCGG 70 0.0 41.785717 2 CGACGTT 65 0.0 41.538464 27 TCGACGT 65 0.0 41.538464 26 GGCGATA 170 0.0 41.02941 8 AACGGGA 205 0.0 40.609756 4 GGCCGAT 100 0.0 40.5 8 CATACGA 100 0.0 40.5 18 AATACGG 50 1.0786607E-9 40.5 2 ACGGGAT 290 0.0 40.344826 5 GGACTCG 45 1.9243089E-8 40.0 8 >>END_MODULE