SRR1547603_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547603_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2295113
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20481	0.8923743623952285	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8496	0.37017785180947516	No Hit
GAGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	2792	0.12164978369256765	No Hit
AAGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	2388	0.10404716456226773	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGGT	25	3.892025E-5	45.000004	16
CGAACCG	25	3.892025E-5	45.000004	29
CATTGCG	25	3.892025E-5	45.000004	1
TTCACGC	25	3.892025E-5	45.000004	41
TCGATTG	25	3.892025E-5	45.000004	1
CACGTTA	25	3.892025E-5	45.000004	30
ATCGGTC	25	3.892025E-5	45.000004	22
CTTAACG	35	1.2126293E-7	45.0	1
GTCGCGC	20	7.034758E-4	45.0	37
TCGTTAG	80	0.0	45.0	1
ACGCCCG	35	1.2126293E-7	45.0	29
CGAGTCA	40	6.8193913E-9	45.0	21
CGACGGA	40	6.8193913E-9	45.0	29
CGGTTTA	40	6.8193913E-9	45.0	11
CTATACG	45	3.8562575E-10	45.0	1
CGCGCCA	35	1.2126293E-7	45.0	26
TATATCG	40	6.8193913E-9	45.0	15
CGACATA	20	7.034758E-4	45.0	29
ATCGTAG	45	3.8562575E-10	45.0	1
ATATCGT	35	1.2126293E-7	45.0	16