SRR1547601_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547601_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2398757
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13022	0.5428644919014306	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3376	0.1407395580294294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAA	30	2.1664928E-6	45.000004	18
GTCGACA	20	7.0348213E-4	45.000004	33
CGTTGTC	30	2.1664928E-6	45.000004	36
TAACGCG	40	6.8212103E-9	45.000004	1
AATGCGC	40	6.8212103E-9	45.000004	39
CGAATCG	20	7.0348213E-4	45.000004	26
CGTAACG	20	7.0348213E-4	45.000004	16
CGTCGAC	20	7.0348213E-4	45.000004	32
TATCGGC	25	3.8920778E-5	45.000004	44
TGTCGAT	35	1.2126657E-7	45.0	38
ACGTTAG	115	0.0	43.043476	1
ATAGCGG	410	0.0	42.80488	2
CGGTCTA	245	0.0	42.2449	31
CGTTTTT	7755	0.0	41.924564	1
CCTCGTC	1300	0.0	41.71154	36
CTCGTCC	1310	0.0	41.39313	37
TTTCGCG	60	3.6379788E-12	41.250004	1
CCCGATA	60	3.6379788E-12	41.250004	16
CGTTAGG	430	0.0	40.2907	2
CTCCGTA	45	1.9297659E-8	40.0	11