SRR1547594_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547594_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1788700
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14488	0.809973723933583	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6932	0.38754402638787944	No Hit
GAGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	1827	0.10214121988036003	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	60	0.0	45.000004	5
CTAACCG	35	1.2124292E-7	45.000004	1
GCCGAAC	30	2.1661817E-6	45.000004	12
CTCGAAT	35	1.2124292E-7	45.000004	16
CTCGAAG	30	2.1661817E-6	45.000004	1
CGCGTCA	30	2.1661817E-6	45.000004	39
GCTCGAA	35	1.2124292E-7	45.000004	15
TAAGCGA	35	1.2124292E-7	45.000004	28
GGTACGA	25	3.8916794E-5	45.0	8
CGAACTA	40	6.8193913E-9	45.0	34
AAATCGT	55	1.8189894E-12	45.0	12
GTCGAAT	25	3.8916794E-5	45.0	17
GTCGAAC	25	3.8916794E-5	45.0	39
ATAGGCC	20	7.0343417E-4	45.0	4
CGAAACG	20	7.0343417E-4	45.0	41
CGTTGCC	20	7.0343417E-4	45.0	38
GGTCCGT	25	3.8916794E-5	45.0	8
CTAAGCG	40	6.8193913E-9	45.0	1
CACGAAA	40	6.8193913E-9	45.0	25
GTAGCTA	55	1.8189894E-12	45.0	27