##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547588_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2856201 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.234219160346207 31.0 31.0 33.0 30.0 34.0 2 31.629414036337078 31.0 31.0 34.0 30.0 34.0 3 31.625819751481075 31.0 31.0 34.0 30.0 34.0 4 35.49800626776617 37.0 35.0 37.0 33.0 37.0 5 35.437019663532084 37.0 35.0 37.0 33.0 37.0 6 35.49172239628793 37.0 35.0 37.0 33.0 37.0 7 35.87980362726573 37.0 35.0 37.0 35.0 37.0 8 35.91006970447808 37.0 35.0 37.0 35.0 37.0 9 37.74455614293252 39.0 37.0 39.0 35.0 39.0 10 37.068424806237374 39.0 37.0 39.0 33.0 39.0 11 36.7229949852969 39.0 35.0 39.0 32.0 39.0 12 36.32794645754973 38.0 35.0 39.0 32.0 39.0 13 36.19956158547665 38.0 35.0 39.0 32.0 39.0 14 37.24630374402922 39.0 35.0 41.0 32.0 41.0 15 37.42976807304528 39.0 35.0 41.0 32.0 41.0 16 37.4880619396184 39.0 35.0 41.0 32.0 41.0 17 37.3657099062706 39.0 35.0 41.0 32.0 41.0 18 37.20925243006357 39.0 35.0 41.0 32.0 41.0 19 37.11414112662239 38.0 35.0 41.0 32.0 41.0 20 36.90126080062293 38.0 35.0 41.0 32.0 41.0 21 36.754196570899595 38.0 35.0 41.0 31.0 41.0 22 36.70663444204382 38.0 35.0 41.0 31.0 41.0 23 36.61140690028468 38.0 35.0 40.0 31.0 41.0 24 36.50860916301059 38.0 35.0 40.0 31.0 41.0 25 36.4157046370336 38.0 35.0 40.0 31.0 41.0 26 36.30631667729267 38.0 35.0 40.0 31.0 41.0 27 36.21373110645924 38.0 35.0 40.0 30.0 41.0 28 36.193937681556726 38.0 35.0 40.0 30.0 41.0 29 36.20360786933413 38.0 35.0 40.0 30.0 41.0 30 36.15353471271805 38.0 35.0 40.0 30.0 41.0 31 36.01004586161828 38.0 35.0 40.0 30.0 41.0 32 35.78734584855898 38.0 35.0 40.0 29.0 41.0 33 35.548225422510534 38.0 34.0 40.0 27.0 41.0 34 35.32236456747967 38.0 34.0 40.0 26.0 41.0 35 35.067493849347436 38.0 34.0 40.0 25.0 41.0 36 34.95773441715061 38.0 34.0 40.0 24.0 41.0 37 34.92556476242393 38.0 34.0 40.0 24.0 41.0 38 34.826173998258525 38.0 34.0 40.0 23.0 41.0 39 34.769159803529234 38.0 34.0 40.0 23.0 41.0 40 34.69915177538275 38.0 34.0 40.0 23.0 41.0 41 34.60930970894555 38.0 34.0 40.0 23.0 41.0 42 34.569219043057544 38.0 34.0 40.0 23.0 41.0 43 34.526467149895964 38.0 34.0 40.0 23.0 41.0 44 34.39262888011033 37.0 33.0 40.0 23.0 41.0 45 34.301802989355444 37.0 33.0 40.0 23.0 41.0 46 34.27679739626168 37.0 33.0 40.0 23.0 41.0 47 34.208087245960634 37.0 33.0 40.0 23.0 41.0 48 34.063939127533395 37.0 33.0 40.0 22.0 41.0 49 34.00639625852662 37.0 33.0 40.0 22.0 41.0 50 33.92348157570143 37.0 33.0 40.0 22.0 41.0 51 33.512837156768725 36.0 32.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 8.0 11 2.0 12 5.0 13 5.0 14 24.0 15 68.0 16 197.0 17 622.0 18 1401.0 19 2733.0 20 4811.0 21 7594.0 22 12139.0 23 18389.0 24 27739.0 25 41615.0 26 55763.0 27 62496.0 28 63867.0 29 67026.0 30 74208.0 31 88168.0 32 106764.0 33 135459.0 34 210671.0 35 301961.0 36 214172.0 37 264969.0 38 397888.0 39 695246.0 40 191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.763626229386514 23.385223939071516 28.264677450921695 17.586472380620272 2 33.68393891046183 25.144483879110744 28.219197458442174 12.95237975198524 3 26.458747125990083 25.06651317606849 35.255291906977135 13.219447790964292 4 23.41988536521064 27.197000491211927 35.31929300493908 14.063821138638351 5 21.958398586093907 31.411689863563524 33.100786674327196 13.529124876015377 6 20.224136886724708 39.83077521504964 29.71475046749161 10.230337430734043 7 85.83559070247507 2.479202269027985 10.286635989553956 1.3985710389429875 8 86.3973508867198 2.1151872714840447 9.809883828203967 1.6775780135921805 9 82.14596941881891 4.247950336828535 11.130484164104697 2.4755960802478536 10 41.56325132579955 30.668814974856463 17.34023620886625 10.427697490477735 11 28.883996609482317 24.049707986237664 30.943515529894427 16.12277987438559 12 29.268738439626624 21.851893476684587 31.184219878082807 17.695148205605978 13 22.115110246092627 28.32920372200696 32.22871919728338 17.326966834617032 14 16.923773922073412 31.87398225825143 32.23011965894557 18.972124160729585 15 16.45447921907457 26.701097016631532 40.42908744867746 16.415336315616443 16 19.6629718986864 24.607161750871175 38.98044990531129 16.74941644513114 17 19.802702961031105 25.12417718500904 31.637024145009402 23.436095708950454 18 21.099215356342217 25.575160851774786 34.483322427238136 18.842301364644857 19 23.787436528451604 27.97800294867203 29.96112668541185 18.27343383746452 20 25.255925615879278 26.803925914177608 30.233131351750103 17.707017118193015 21 21.78176535895058 27.95125413092426 32.46189606403751 17.80508444608765 22 21.982346480517304 23.984131368905757 32.325561121223615 21.707961029353324 23 19.184224079467796 28.245141010734187 31.889352324993936 20.68128258480408 24 19.47583520907667 25.943832384345498 36.4937551663906 18.086577240187225 25 18.980701988410477 28.088464362277026 33.25056604909808 19.68026760021441 26 18.59368440806512 31.59150914098833 30.56437554639887 19.250430904547684 27 18.35284001371052 30.954474142401047 32.14448142830284 18.548204415585598 28 17.325881476828837 28.259635788937825 35.96756670836541 18.446916025867928 29 17.359842672136867 26.037348211838037 35.9525117454969 20.650297370528197 30 19.1134657539858 28.177673770158336 33.31813832429861 19.39072215155726 31 22.872199820670886 26.968095032527472 31.08534728473241 19.07435786206923 32 23.435920651242682 26.560560688831075 31.32297061726398 18.680548042662267 33 22.2733974254613 27.869362135227878 30.456014825287152 19.401225614023662 34 18.618297521778054 28.068402748966196 31.57690932816003 21.736390401095722 35 19.151523299655732 28.36179946719436 31.9771262596715 20.509550973478408 36 22.28085488381245 27.76772363009466 30.025617944955556 19.925803541137334 37 19.113045615487145 30.156736168077806 31.702285658467318 19.027932557967734 38 19.10310233768562 30.679633541196853 29.700045620038644 20.51721850107888 39 19.38039374679863 29.681174399140676 30.273254578371763 20.665177275688933 40 21.43228015115183 28.216501569742462 29.786804220011128 20.56441405909458 41 17.9575246980167 27.689157730845977 30.708973213019675 23.644344358117653 42 20.215944186000915 27.92450531317649 29.120429549601024 22.73912095122157 43 20.65736970192224 27.727425345765234 29.499849625429025 22.115355326883506 44 19.67907720780155 29.678723591231847 29.486860343512237 21.15533885745436 45 18.626700291751174 31.664018043548054 28.161813541834064 21.547468122866704 46 20.62015243324962 30.113636960424007 28.693463800341785 20.572746805984593 47 19.950521689474936 28.63709521843876 30.191117501884495 21.22126559020181 48 20.250010415933613 27.215521596694348 31.47863193101606 21.05583605635598 49 20.273012998735034 26.604115046525088 31.214889988484707 21.90798196625518 50 18.690736401254675 29.33375487229365 31.223572850790266 20.751935875661413 51 17.915335790443322 29.964347747234875 29.523377381353765 22.59693908096804 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1560.0 1 2351.0 2 3142.0 3 28562.5 4 53983.0 5 37903.0 6 21823.0 7 21610.0 8 21397.0 9 22719.5 10 24042.0 11 24857.0 12 25672.0 13 25237.0 14 24802.0 15 23975.5 16 23149.0 17 21572.5 18 19996.0 19 19882.0 20 19768.0 21 18607.0 22 17446.0 23 18633.5 24 19821.0 25 21860.0 26 28096.5 27 32294.0 28 38646.0 29 44998.0 30 51069.0 31 57140.0 32 65928.5 33 74717.0 34 82909.5 35 91102.0 36 103038.5 37 114975.0 38 126851.0 39 138727.0 40 158465.0 41 178203.0 42 199557.0 43 220911.0 44 229484.5 45 238058.0 46 248068.5 47 258079.0 48 250211.5 49 242344.0 50 225804.0 51 209264.0 52 189318.5 53 169373.0 54 149799.5 55 130226.0 56 116288.0 57 102350.0 58 90707.5 59 79065.0 60 70923.5 61 62782.0 62 52995.0 63 43208.0 64 34631.5 65 26055.0 66 20960.5 67 15866.0 68 13180.5 69 10495.0 70 8649.0 71 6803.0 72 5193.5 73 3584.0 74 2966.0 75 1927.0 76 1506.0 77 1096.5 78 687.0 79 493.5 80 300.0 81 216.0 82 132.0 83 78.0 84 24.0 85 26.5 86 29.0 87 34.0 88 39.0 89 24.0 90 9.0 91 7.5 92 6.0 93 3.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2856201.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.57981449276789 #Duplication Level Percentage of deduplicated Percentage of total 1 78.03549939008488 17.620271000786182 2 7.906709340907965 3.5706406033187386 3 2.9098380574874487 1.9711081062618798 4 1.569734611152664 1.4177726529081716 5 1.041017486855899 1.175299086846682 6 0.6916542567089617 0.9370454885772971 7 0.5402660740553552 0.8539375410234143 8 0.426750034194293 0.7708749285511592 9 0.3807581615954373 0.7737703789889081 >10 4.228714538059173 22.982865212819707 >50 1.6037443047955944 25.94010537576827 >100 0.6608859104257033 19.510313269362424 >500 0.0018976430042846946 0.28954824552174513 >1k 0.0023720537553558684 0.9205627472926515 >5k 0.0 0.0 >10k+ 1.5813691702372455E-4 1.265885361972735 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35452 1.2412291711962848 No Hit GAATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTC 3184 0.11147674831008042 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.5011541554673495E-5 0.0 0.0 0.047370615723473244 0.0 2 3.5011541554673495E-5 0.0 0.0 0.16112311423460743 0.0 3 3.5011541554673495E-5 0.0 0.0 0.30474045769187813 0.0 4 3.5011541554673495E-5 0.0 0.0 0.5143195454381537 0.0 5 3.5011541554673495E-5 0.0 0.0 0.9873604833833474 0.0 6 3.5011541554673495E-5 0.0 0.0 1.6582166311124462 0.0 7 3.5011541554673495E-5 0.0 0.0 2.031089548669719 0.0 8 3.5011541554673495E-5 0.0 0.0 2.6916873147232985 0.0 9 3.5011541554673495E-5 0.0 0.0 3.0072463387555706 0.0 10 3.5011541554673495E-5 0.0 0.0 3.491806073872252 0.0 11 3.5011541554673495E-5 0.0 0.0 3.9056424950484927 0.0 12 3.5011541554673495E-5 0.0 0.0 4.269167331010667 0.0 13 3.5011541554673495E-5 0.0 0.0 4.449301712309463 0.0 14 3.5011541554673495E-5 0.0 0.0 4.547299017120994 0.0 15 3.5011541554673495E-5 0.0 0.0 4.654119230404302 0.0 16 3.5011541554673495E-5 0.0 0.0 4.836004188780832 0.0 17 3.5011541554673495E-5 0.0 0.0 5.044532930280467 0.0 18 3.5011541554673495E-5 0.0 0.0 5.293044852235539 0.0 19 3.5011541554673495E-5 0.0 0.0 5.465021544352096 0.0 20 3.5011541554673495E-5 0.0 0.0 5.624674173841407 0.0 21 3.5011541554673495E-5 0.0 0.0 5.839680050528656 0.0 22 3.5011541554673495E-5 0.0 0.0 6.074467448194297 0.0 23 3.5011541554673495E-5 0.0 0.0 6.357675807830051 0.0 24 3.5011541554673495E-5 0.0 0.0 6.56690478016078 0.0 25 3.5011541554673495E-5 0.0 0.0 6.765455232317334 0.0 26 3.5011541554673495E-5 0.0 0.0 6.944259175037051 0.0 27 3.5011541554673495E-5 0.0 0.0 7.128174802823751 0.0 28 7.002308310934699E-5 0.0 0.0 7.321018373706893 0.0 29 7.002308310934699E-5 0.0 0.0 7.546457689777435 0.0 30 7.002308310934699E-5 0.0 0.0 7.794339403984523 0.0 31 1.050346246640205E-4 0.0 0.0 8.035253821422232 0.0 32 1.050346246640205E-4 0.0 0.0 8.261743483739414 0.0 33 1.050346246640205E-4 0.0 0.0 8.490788988590088 0.0 34 1.050346246640205E-4 0.0 0.0 8.715002900706217 0.0 35 1.050346246640205E-4 0.0 0.0 8.96666586140121 0.0 36 1.050346246640205E-4 0.0 0.0 9.214547575608298 0.0 37 1.050346246640205E-4 0.0 0.0 9.46417986689312 0.0 38 1.050346246640205E-4 0.0 0.0 9.734398944612092 0.0 39 1.050346246640205E-4 0.0 0.0 10.080207940547602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTCG 20 7.035048E-4 45.0 1 TAGTACG 100 0.0 45.0 1 CGTTTTT 20645 0.0 43.408817 1 TACGGGA 1020 0.0 39.485294 4 GCGATAC 150 0.0 39.0 9 TACCCGC 35 6.2515483E-6 38.57143 41 CGTTAGG 420 0.0 38.57143 2 ACGTAGG 380 0.0 38.486843 2 CGGGATC 780 0.0 38.365383 6 ACGGGAT 1275 0.0 38.294117 5 TTACGGG 700 0.0 38.25 3 GGCACCG 930 0.0 38.225807 8 TAGGGAC 2935 0.0 37.94719 5 AGGGATC 3250 0.0 37.938465 6 AGTACGG 445 0.0 37.92135 2 ACGGGTA 250 0.0 37.800003 5 AGGGCGA 2110 0.0 37.535545 6 TCGATAC 30 1.14034636E-4 37.500004 23 GTTAGCG 175 0.0 37.285713 1 ATAGGGA 3660 0.0 37.2541 4 >>END_MODULE