SRR1547584_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547584_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	238549
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1031	0.43219632025286214	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	425	0.17816046179191697	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	297	0.12450272271105726	No Hit
GAGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	266	0.11150748902741157	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCTAC	65	0.0	45.000004	26
CTTGTCT	45	3.8198777E-10	45.0	39
TTGATCG	20	7.022036E-4	45.0	34
GATCGTA	20	7.022036E-4	45.0	36
AGGAGTA	20	7.022036E-4	45.0	10
TATGGCC	50	2.1827873E-11	45.0	10
GGACTAA	100	0.0	45.0	8
TAGCGAG	35	1.2065175E-7	45.0	1
CTCCCAA	25	3.8814826E-5	45.0	34
GTTAGCG	20	7.022036E-4	45.0	1
AATGGGC	25	3.8814826E-5	45.0	4
ATATGCT	50	2.1827873E-11	45.0	34
GTAGGCC	20	7.022036E-4	45.0	22
TCGATAG	25	3.8814826E-5	45.0	1
CGGGGTA	20	7.022036E-4	45.0	6
TGTTGCG	20	7.022036E-4	45.0	1
CTAACGG	25	3.8814826E-5	45.0	2
TGCGCGG	25	3.8814826E-5	45.0	2
ATTCATA	20	7.022036E-4	45.0	43
GCGATGC	25	3.8814826E-5	45.0	9