SRR1547580_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547580_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1401528
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9425	0.6724803214777014	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3494	0.2492993361531129	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2659	0.18972150395853668	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2187	0.15604397486172233	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1734	0.12372210901244926	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCTGCT	1694	0.12086808112288874	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTTCAGTCGTATGCCGTCTTCTGC	1602	0.1143038169768995	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1474	0.10517092773030577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCGG	35	1.2121745E-7	45.000004	3
GATATCG	35	1.2121745E-7	45.000004	10
GCCAACG	35	1.2121745E-7	45.000004	1
AATCGGC	55	1.8189894E-12	45.000004	15
CGGACTC	35	1.2121745E-7	45.000004	14
TCTGCGA	20	7.0338167E-4	45.0	18
AAGTACG	20	7.0338167E-4	45.0	1
AACCGAT	20	7.0338167E-4	45.0	37
AGCCGGT	20	7.0338167E-4	45.0	18
ATCTCGT	20	7.0338167E-4	45.0	19
TCGTTCG	25	3.8912447E-5	45.0	38
ATCTCGC	25	3.8912447E-5	45.0	39
GGTACGT	20	7.0338167E-4	45.0	8
ACCGGCC	20	7.0338167E-4	45.0	41
TCCGCTT	25	3.8912447E-5	45.0	10
CTCGTTT	25	3.8912447E-5	45.0	11
CGTATTA	40	6.8175723E-9	45.0	30
CTCGTAG	45	3.8562575E-10	45.0	1
CTCCGGT	25	3.8912447E-5	45.0	30
CGAAACG	20	7.0338167E-4	45.0	30