SRR1547579_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547579_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1577078
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7220	0.45780868162513205	No Hit
CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGCT	3240	0.20544323108939444	Illumina PCR Primer Index 10 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	3038	0.1926347333486359	Illumina PCR Primer Index 10 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	2714	0.17209041023969646	Illumina PCR Primer Index 10 (95% over 23bp)
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	2125	0.13474285989659357	No Hit
TACGTAGGGGTTTTCTTGTAACTACTTTGCAGATTCTAAAAGTAGTTATTG	1625	0.1030386575679833	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1608	0.10196071468881057	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGGC	30	2.166018E-6	45.000004	25
CATGCGA	30	2.166018E-6	45.000004	36
TAGCGTC	30	2.166018E-6	45.000004	43
TGGGTCG	30	2.166018E-6	45.000004	6
CGCATAC	30	2.166018E-6	45.000004	43
GTCTACG	30	2.166018E-6	45.000004	1
TAACGTT	30	2.166018E-6	45.000004	30
GTTACGC	30	2.166018E-6	45.000004	18
TGCGACC	30	2.166018E-6	45.000004	38
ACGGATC	30	2.166018E-6	45.000004	36
GTCGTAG	95	0.0	45.000004	1
CGGGACG	120	0.0	45.000004	6
CCGGTCA	30	2.166018E-6	45.000004	31
ACCGTCA	30	2.166018E-6	45.000004	31
ATCGAAA	30	2.166018E-6	45.000004	39
ACGCGGT	30	2.166018E-6	45.000004	11
TCACGCG	20	7.0340873E-4	45.0	1
CCTTCGC	25	3.8914688E-5	45.0	23
TCGCCCA	35	1.21232E-7	45.0	19
CTTCGCA	25	3.8914688E-5	45.0	24