SRR1547578_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547578_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1846594
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5565	0.3013656494064207	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	2033	0.11009458494937166	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1983	0.10738689717393211	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.034399E-4	45.000004	26
CGAACGC	20	7.034399E-4	45.000004	42
CGTATTC	20	7.034399E-4	45.000004	34
GGTAATC	20	7.034399E-4	45.000004	9
CGTATCC	20	7.034399E-4	45.000004	20
GACACGC	30	2.16622E-6	45.000004	13
CGCCTAA	20	7.034399E-4	45.000004	20
CCGTATG	20	7.034399E-4	45.000004	5
CCCGTAC	20	7.034399E-4	45.000004	26
CTACGAT	20	7.034399E-4	45.000004	12
TCGTCGA	20	7.034399E-4	45.000004	40
CGTCGTT	20	7.034399E-4	45.000004	12
ACCGTCC	20	7.034399E-4	45.000004	35
TACGTCG	20	7.034399E-4	45.000004	10
GTACGAT	30	2.16622E-6	45.000004	11
GACTACG	30	2.16622E-6	45.000004	30
AACCGTC	35	1.2124656E-7	45.0	34
CCCTCGA	35	1.2124656E-7	45.0	20
AACCCGC	35	1.2124656E-7	45.0	21
TTTCGCA	45	3.8562575E-10	45.0	40