##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1547577_1.fastq.gz File type Conventional base calls Encoding Illumina 1.5 Total Sequences 2374509 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.575753555787745 31.0 31.0 33.0 30.0 34.0 2 32.0028831223634 31.0 31.0 34.0 30.0 34.0 3 32.0943681409504 33.0 31.0 34.0 30.0 34.0 4 35.84002798052145 37.0 35.0 37.0 35.0 37.0 5 35.778888182778 37.0 35.0 37.0 35.0 37.0 6 35.82556857017598 37.0 35.0 37.0 35.0 37.0 7 36.132224388284065 37.0 35.0 37.0 35.0 37.0 8 36.11121414995689 37.0 35.0 37.0 35.0 37.0 9 37.80802136357453 39.0 38.0 39.0 35.0 39.0 10 37.41481165158776 39.0 37.0 39.0 35.0 39.0 11 37.13744946850065 39.0 37.0 39.0 33.0 39.0 12 36.94178291175144 39.0 37.0 39.0 33.0 39.0 13 36.87878925706325 39.0 37.0 39.0 33.0 39.0 14 37.986175247177414 40.0 37.0 41.0 33.0 41.0 15 38.16703958586807 40.0 37.0 41.0 33.0 41.0 16 38.224416500421775 40.0 37.0 41.0 33.0 41.0 17 38.16054224262784 40.0 37.0 41.0 33.0 41.0 18 38.030089167907974 40.0 37.0 41.0 33.0 41.0 19 37.995540551751965 40.0 37.0 41.0 33.0 41.0 20 37.876565639464836 40.0 36.0 41.0 33.0 41.0 21 37.75687142057579 40.0 35.0 41.0 33.0 41.0 22 37.71176904362123 40.0 35.0 41.0 33.0 41.0 23 37.61435901064178 39.0 35.0 41.0 33.0 41.0 24 37.586280363645706 39.0 35.0 41.0 33.0 41.0 25 37.5202279713406 39.0 35.0 41.0 33.0 41.0 26 37.54871596612184 39.0 35.0 41.0 33.0 41.0 27 37.525621086296155 39.0 35.0 41.0 33.0 41.0 28 37.474092117570414 39.0 35.0 41.0 33.0 41.0 29 37.42196091907843 39.0 35.0 41.0 33.0 41.0 30 37.319052486219256 39.0 35.0 41.0 32.0 41.0 31 37.168602014142714 39.0 35.0 41.0 32.0 41.0 32 37.03146039876033 39.0 35.0 41.0 31.0 41.0 33 36.88079598771788 39.0 35.0 41.0 31.0 41.0 34 36.76018873796646 39.0 35.0 41.0 31.0 41.0 35 36.62961311159486 39.0 35.0 41.0 30.0 41.0 36 36.57395907954023 39.0 35.0 41.0 30.0 41.0 37 36.537017126488045 39.0 35.0 41.0 30.0 41.0 38 36.40230338145697 39.0 35.0 41.0 30.0 41.0 39 36.32490969712054 39.0 35.0 41.0 30.0 41.0 40 36.27046559941445 39.0 35.0 41.0 30.0 41.0 41 36.217894309939446 39.0 35.0 41.0 30.0 41.0 42 36.21366059256882 39.0 35.0 41.0 30.0 41.0 43 36.19308581268801 39.0 35.0 41.0 30.0 41.0 44 36.08544545419706 39.0 35.0 41.0 29.0 41.0 45 36.03805839438806 39.0 35.0 41.0 29.0 41.0 46 36.02237304638559 39.0 35.0 41.0 29.0 41.0 47 35.97085839640953 39.0 35.0 41.0 29.0 41.0 48 35.88160920847215 38.0 35.0 40.0 29.0 41.0 49 35.81339131584677 38.0 35.0 40.0 28.0 41.0 50 35.71096593021968 38.0 35.0 40.0 28.0 41.0 51 35.28768894958916 38.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 4.0 13 9.0 14 11.0 15 44.0 16 104.0 17 240.0 18 499.0 19 938.0 20 1774.0 21 3037.0 22 4954.0 23 7742.0 24 12300.0 25 19961.0 26 27536.0 27 31467.0 28 33353.0 29 36202.0 30 42466.0 31 52213.0 32 67209.0 33 89498.0 34 145948.0 35 195962.0 36 173114.0 37 231615.0 38 383684.0 39 812355.0 40 263.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.09050797449073 23.63739198293205 29.750445249944303 14.521654792632917 2 31.51106186584258 24.97484743161639 31.077245864302895 12.436844838238137 3 28.59285856570769 24.847368445434405 33.91421131695015 12.645561671907751 4 25.863199507771924 26.750835646443115 33.81237973829537 13.573585107489592 5 23.593172314781707 31.43125589332363 31.58080259961112 13.394769192283542 6 22.321793684504883 39.75377646494496 27.423479969964315 10.50094988058584 7 88.2232495223223 2.7871446265312114 7.557099172923749 1.43250667822274 8 89.00286332879766 2.071207142192344 7.181358335554846 1.7445711934551522 9 83.76573851688917 5.480627784523032 8.342019339577151 2.411614359010642 10 38.56666788797179 40.6602375480573 13.23570472885131 7.537389835119597 11 24.109658038777702 24.932438664161726 33.94727078313874 17.010632513921824 12 26.250311116950915 22.97413907464659 32.48739002463246 18.288159783770034 13 25.650818758741277 24.220923146637894 31.903100809472612 18.225157285148214 14 17.344133039714738 29.34375064487016 33.29138781954501 20.020728495870095 15 16.663529175926474 30.99386020436225 35.87230033661696 16.470310283094317 16 23.28106568557963 29.835010101035625 32.34630822624804 14.537615987136709 17 22.873276117294143 29.312080939680584 29.727619478384792 18.087023464640477 18 21.926890990937494 29.77849315374252 31.688403792110286 16.6062120632097 19 22.57649897305085 30.760675154316115 29.769817675991124 16.89300819664192 20 23.978515137234687 31.321422660432113 29.917342911734597 14.782719290598603 21 25.488300949796354 26.24197255095685 32.9534232129674 15.316303286279394 22 23.35367016928552 22.685911066245694 34.51319830752379 19.447220456944994 23 19.91548568567228 25.76048353575413 35.338758454905836 18.985272323667758 24 19.19415761321604 28.03278488310636 34.98361134870409 17.78944615497351 25 20.614661810083685 30.71712930968044 31.213442442205945 17.454766438029925 26 19.75962188393474 33.181386130774825 28.628529098015633 18.4304628872748 27 18.463185441706052 31.894383217751543 32.48701099890546 17.155420341636944 28 17.554450204231696 30.367372791596075 33.911726592739804 18.16645041143243 29 18.54122262749899 28.88908822834531 34.23545667756998 18.334232466585725 30 20.491057309111063 27.8394396483652 33.13733491850315 18.532168124020586 31 21.419038630723236 28.630003086953977 31.56884223222569 18.382116050097093 32 22.275931571537527 28.606419263940463 31.5697266255887 17.54792253893331 33 21.760877722510212 29.121094087240774 30.68006901637349 18.437959173875527 34 19.499694463150067 29.05392230562192 32.500950722865234 18.94543250836278 35 19.852104161323457 28.77348538160942 32.21840810036938 19.156002356697744 36 22.116740766196298 28.969483796439597 30.774741220184886 18.139034217179216 37 20.885201951224442 30.41643556625812 30.380765033950176 18.31759744856726 38 21.010659466862414 29.898812765081118 29.974280998724367 19.1162467693321 39 20.725842690004544 29.26765070168191 30.08693586758357 19.919570740729977 40 21.538600190607827 28.795468873775587 30.715865890590432 18.95006504502615 41 19.733258538923202 28.47780320057747 30.75427383092673 21.034664429572597 42 20.4441844608717 28.718989904860333 30.9789939730698 19.857831661198166 43 21.203962587633907 28.058895544299894 29.976428811177385 20.760713056888815 44 20.355618782662017 29.402373290646615 30.252106856617516 19.989901070073856 45 19.940711953502806 29.733346978259505 29.564427845925202 20.761513222312487 46 21.26553321128705 28.861672034092102 30.02031156757039 19.85248318705046 47 19.90613638440621 29.069799272186376 31.245449059152865 19.778615284254556 48 19.866422911010233 28.79921701707595 31.333635711635544 20.000724360278273 49 21.453656313789505 27.746536231279812 31.021781766251465 19.778025688679218 50 19.666044643334686 28.527245000966516 31.44191072764938 20.364799628049422 51 19.23964070045639 29.120125465938436 30.945050113518207 20.695183720086973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1710.0 1 2799.5 2 3889.0 3 19790.0 4 35691.0 5 24465.0 6 13239.0 7 12773.0 8 12307.0 9 12838.5 10 13370.0 11 13526.5 12 13683.0 13 13813.5 14 13944.0 15 13449.5 16 12955.0 17 12362.5 18 11770.0 19 12184.0 20 12598.0 21 13628.5 22 14659.0 23 16490.5 24 18322.0 25 23063.5 26 35318.5 27 42832.0 28 47130.5 29 51429.0 30 62317.0 31 73205.0 32 76773.0 33 80341.0 34 93032.5 35 105724.0 36 113228.0 37 120732.0 38 127244.0 39 133756.0 40 146359.5 41 158963.0 42 169239.5 43 179516.0 44 182581.0 45 185646.0 46 192002.0 47 198358.0 48 194615.5 49 190873.0 50 178137.5 51 165402.0 52 146117.0 53 126832.0 54 113742.5 55 100653.0 56 93856.0 57 87059.0 58 75242.5 59 63426.0 60 53284.0 61 43142.0 62 35353.0 63 27564.0 64 22056.5 65 16549.0 66 12257.5 67 7966.0 68 6061.0 69 4156.0 70 3312.5 71 2469.0 72 1763.5 73 1058.0 74 767.5 75 397.0 76 317.0 77 194.0 78 71.0 79 52.5 80 34.0 81 19.5 82 5.0 83 5.5 84 6.0 85 3.5 86 1.0 87 1.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2374509.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.372220764426082 #Duplication Level Percentage of deduplicated Percentage of total 1 75.71662468465097 13.910825442436009 2 9.053898123102346 3.3268043019251845 3 3.2783661222684537 1.8069259843479446 4 1.736739304881842 1.276310316781804 5 1.0561259830853063 0.9701689858144884 6 0.6852173216816585 0.7553378343326514 7 0.5257401967300855 0.6761310471340551 8 0.40561051038274143 0.596157267289861 9 0.3453873529145469 0.5710979427288119 >10 4.246270615969535 18.91399451530771 >50 1.7013054828207388 22.71144757938767 >100 1.242905247530102 32.594438957104074 >500 0.003950156707541742 0.5296132425652639 >1k 0.001626535114870129 0.3612435320479818 >5k 0.0 0.0 >10k+ 2.323621592671613E-4 0.999503050796431 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 23413 0.9860143718132884 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06338152434882327 0.0 2 0.0 0.0 0.0 0.21448644751399132 0.0 3 0.0 0.0 0.0 0.3255830994955168 0.0 4 0.0 0.0 0.0 0.4726871955423205 0.0 5 0.0 0.0 0.0 0.8390366176754858 0.0 6 0.0 0.0 0.0 1.1922885952422164 0.0 7 0.0 0.0 0.0 1.4227362372599976 0.0 8 0.0 0.0 0.0 1.8629114482194002 0.0 9 0.0 0.0 0.0 2.042443300909788 0.0 10 0.0 0.0 0.0 2.3343352246717113 0.0 11 0.0 0.0 0.0 2.7770372738111333 0.0 12 0.0 0.0 0.0 3.0941133514339176 0.0 13 0.0 0.0 0.0 3.2180547641638757 0.0 14 0.0 0.0 0.0 3.27861465254501 0.0 15 4.211396966699221E-5 0.0 0.0 3.3630531617273296 0.0 16 4.211396966699221E-5 0.0 0.0 3.5323092058189713 0.0 17 4.211396966699221E-5 0.0 0.0 3.7704637042858122 0.0 18 4.211396966699221E-5 0.0 0.0 4.0194836069267375 0.0 19 8.422793933398442E-5 0.0 0.0 4.199857739010465 0.0 20 8.422793933398442E-5 0.0 0.0 4.389075804724261 0.0 21 8.422793933398442E-5 0.0 0.0 4.616701810774353 0.0 22 8.422793933398442E-5 0.0 0.0 4.8999182567848765 0.0 23 8.422793933398442E-5 0.0 0.0 5.165025695838592 0.0 24 8.422793933398442E-5 0.0 0.0 5.363129809152124 0.0 25 8.422793933398442E-5 0.0 0.0 5.539166202360151 0.0 26 8.422793933398442E-5 0.0 0.0 5.7003363642757305 0.0 27 8.422793933398442E-5 0.0 0.0 5.886185312416167 0.0 28 8.422793933398442E-5 0.0 0.0 6.070812955436261 0.0 29 8.422793933398442E-5 0.0 0.0 6.284751921344581 0.0 30 8.422793933398442E-5 0.0 0.0 6.5313292137448204 0.0 31 8.422793933398442E-5 0.0 0.0 6.761608399883934 0.0 32 8.422793933398442E-5 0.0 0.0 6.960133652894135 0.0 33 8.422793933398442E-5 0.0 0.0 7.165902508687059 0.0 34 8.422793933398442E-5 0.0 0.0 7.385737430348758 0.0 35 8.422793933398442E-5 0.0 0.0 7.613447664338185 0.0 36 8.422793933398442E-5 0.0 0.0 7.832187622788543 0.0 37 8.422793933398442E-5 0.0 0.0 8.069205044074375 0.0 38 8.422793933398442E-5 0.0 0.0 8.32045698710765 0.0 39 8.422793933398442E-5 0.0 0.0 8.692365453236858 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGTA 25 3.8920658E-5 45.000004 29 GCGATCG 30 2.1664837E-6 45.000004 9 GTACGCG 30 2.1664837E-6 45.000004 1 ACTATCG 20 7.0348073E-4 45.0 24 TCCGCTA 20 7.0348073E-4 45.0 40 GCGCGAA 20 7.0348073E-4 45.0 21 TACGCTA 20 7.0348073E-4 45.0 19 CGTAACG 20 7.0348073E-4 45.0 44 GTGCGAT 20 7.0348073E-4 45.0 28 TATCCGC 20 7.0348073E-4 45.0 19 CGGACCG 20 7.0348073E-4 45.0 3 CGACGGT 355 0.0 43.732395 28 CGGTCTA 355 0.0 43.732395 31 CGTTTTT 10595 0.0 43.407265 1 CACGACG 360 0.0 42.5 26 TATCGCG 85 0.0 42.352943 1 CGCGGAT 60 3.6379788E-12 41.250004 4 TCGCGAG 55 6.184564E-11 40.909092 1 GACGGTC 380 0.0 40.855263 29 GCGTAAG 190 0.0 40.263157 1 >>END_MODULE