SRR1547576_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547576_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2152285
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10533	0.489386860940814	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2799	0.13004783288458546	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAT	20	7.0346624E-4	45.0	15
CCGCTAT	55	1.8189894E-12	45.0	38
CCTCGCG	20	7.0346624E-4	45.0	12
GTTACGC	20	7.0346624E-4	45.0	45
TCGTACT	20	7.0346624E-4	45.0	33
CGCGTCA	20	7.0346624E-4	45.0	39
TCGACGT	55	1.8189894E-12	45.0	26
TACCGCG	40	6.8193913E-9	45.0	1
ACGGTCG	20	7.0346624E-4	45.0	36
CTAGCGT	20	7.0346624E-4	45.0	14
CGTACGA	30	2.166389E-6	44.999996	36
CGTGTCG	30	2.166389E-6	44.999996	37
CTTACCG	30	2.166389E-6	44.999996	32
TACGCGG	110	0.0	42.954544	2
CGTTTTT	5100	0.0	42.2647	1
CGAATAT	220	0.0	40.909092	14
GCCCGTT	55	6.184564E-11	40.909092	3
TACGTAG	110	0.0	40.909092	1
TCGATAG	105	0.0	40.714287	1
TTTACGG	255	0.0	40.588234	2