SRR1547575_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547575_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	1660703
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6135	0.3694218653184826	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2207	0.13289552677390237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	30	2.1660871E-6	45.000004	15
CGCGAGT	60	0.0	45.000004	33
TCGATAG	30	2.1660871E-6	45.000004	1
TCGCTAA	30	2.1660871E-6	45.000004	23
GTATCCG	30	2.1660871E-6	45.000004	1
GCCCGTA	30	2.1660871E-6	45.000004	21
TGCGTCC	30	2.1660871E-6	45.000004	42
TCGCCGA	20	7.0341956E-4	45.0	38
CTATGCG	35	1.2123564E-7	45.0	1
TCGCACG	20	7.0341956E-4	45.0	1
CGCGGTC	25	3.8915583E-5	45.0	21
TCCGATC	20	7.0341956E-4	45.0	15
CTATCGT	25	3.8915583E-5	45.0	14
GCGAACC	20	7.0341956E-4	45.0	42
GCGAAAA	25	3.8915583E-5	45.0	43
GCGCGCA	20	7.0341956E-4	45.0	12
CTCCCGC	35	1.2123564E-7	45.0	30
CCGGACG	25	3.8915583E-5	45.0	27
CGCGCGG	55	1.8189894E-12	45.0	2
CGATTCG	20	7.0341956E-4	45.0	10