SRR1547574_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1547574_1.fastq.gz
File type	Conventional base calls
Encoding	Illumina 1.5
Total Sequences	2662757
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8862	0.3328129453795446	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	6415	0.240915712549061	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3459	0.1299029539683869	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	3092	0.11612024679683501	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	50	2.1827873E-11	45.000004	30
ATCGACC	25	3.8921942E-5	45.000004	26
TCGCACG	20	7.034963E-4	45.0	29
ATATGCG	35	1.2127384E-7	45.0	1
ACGTCGA	35	1.2127384E-7	45.0	20
CGTCGCA	20	7.034963E-4	45.0	41
ATTCGCG	120	0.0	43.125004	1
CGGTCTA	680	0.0	42.683823	31
TTTACGG	185	0.0	42.567566	2
GCGTAAG	180	0.0	42.5	1
CGACGGT	685	0.0	42.372265	28
ACGGGAT	1165	0.0	41.90987	5
ACGGTCT	705	0.0	41.80851	30
CACGACG	705	0.0	41.48936	26
ACGTACG	115	0.0	41.08696	1
TCACGAC	725	0.0	40.965515	25
CGGGATT	1390	0.0	40.953236	6
TATCGTC	50	1.0822987E-9	40.500004	37
ATCGTAC	45	1.9299478E-8	40.0	27
CGTTAAG	45	1.9299478E-8	40.0	34